IMP-users Mailing List (by thread)
- [IMP-users] fail optimization,
Harianto Tjong
- [IMP-users] error while loading shared libraries: libimp_saxs.so:,
prabhakar g
- [IMP-users] combine IMP.atom.Selectors ?,
Benjamin SCHWARZ
- [IMP-users] Binary installation of IMP 1.0 on Macbook Pro OSX 10.6.3 snowleopard,
Benjamin SCHWARZ
- [IMP-users] Questions about example script local_fitting.py,
Benjamin SCHWARZ
- [IMP-users] IMP.atom.read_pdb confusing error message when not finding file,
Benjamin SCHWARZ
- [IMP-users] pdb parser issue in IMP.atom.read_pdb,
Benjamin SCHWARZ
- [IMP-users] basic map handling,
Benjamin SCHWARZ
- [IMP-users] A remark concerning software design and the get_leaves() function,
Benjamin SCHWARZ
- [IMP-users] problems with a sample script (basic IMP optimization),
Benjamin SCHWARZ
- [IMP-users] ExcludedVolumeRestraint : meaning of the score,
Benjamin SCHWARZ
- [IMP-users] about rotations,
Benjamin SCHWARZ
- [IMP-users] A couple of naïve questions concerning IMP.Model,
Benjamin SCHWARZ
- [IMP-users] IMP svn compiling issues Mac OS X 10.6 fink-64,
Benjamin SCHWARZ
- [IMP-users] installing within python version 2.6,
jeremy adler
[IMP-users] Error of using ConjugateOptimizer to optimize a Modeller model,
Jianlin Cheng
[IMP-users] imp scons install problem,
Benjamin SCHWARZ
[IMP-users] import fails,
Robert Brynmor Fenwick
[IMP-users] add_partial_profiles,
Robert Fenwick
Re: [IMP-users] numerical bug,
Robert Brynmor Fenwick
[IMP-users] single_prot_fft_fit,
Benjamin SCHWARZ
[IMP-users] good coding habits,
Benjamin SCHWARZ
[IMP-users] running error,
Robert Fenwick
[IMP-users] stable nightly build,
Robert Brynmor Fenwick
[IMP-users] compilation bus error,
Robert Brynmor Fenwick
[IMP-users] calculating chi squared,
Robert Brynmor Fenwick
[IMP-users] restraint set,
Keren Lasker
[IMP-users] Question about conditional restraints,
Davide Bau
[IMP-users] how to transcode voxel index vidx to voxel dim index i, j, k ?,
Benjamin SCHWARZ
[IMP-users] is there an easy way in imp to get the residue type using a 1 letter code?,
Keren Lasker
[IMP-users] algebra::Vector3Ds -> atom::Hierarchy,
Keren Lasker
[IMP-users] Symmetry,
Iain Moal
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Iain Moal
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Daniel Russel
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Iain Moal
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Daniel Russel
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Iain Moal
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Iain Moal
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Iain Moal
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Daniel Russel
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Iain Moal
- Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2,
Daniel Russel
[IMP-users] erosion and dilation for EM (mask) maps ?,
Benjamin SCHWARZ
[IMP-users] How to : Access chain properties such as chain ID. Access particle properties.,
Benjamin SCHWARZ
[IMP-users] a remark concerning chains in a hierarchy returned by read_pdb,
Benjamin SCHWARZ
[IMP-users] Strange Pair Restraint behaviour,
Iain Moal
[IMP-users] IMP.hdf5 changes,
Daniel Russel
[IMP-users] [Coarse grain modeling] a bunch of questions and comments regarding the nup84 cg example,
Benjamin SCHWARZ
[IMP-users] Trying to use MultiFit but I have problems with installing/running IMP,
Tolun, Gökhan
[IMP-users] MCCGsampler.set_number_of_attempts,
Benjamin SCHWARZ
[IMP-users] coarse models with MCCG sampler : biased ?,
Benjamin SCHWARZ
[IMP-users] get_connected_pairs,
Pia Unverdorben
[IMP-users] IMP.restrainer examples,
Jascha Casadio
[IMP-users] How to use IMP,
张春雷
[IMP-users] IMP-1.0-Stable Installation Ubuntu 10.04 Help,
Martin Turk
[IMP-users] does IMP.algebra.get_transformation_aligning_first_to_second minimize RMSD ?,
Benjamin SCHWARZ
[IMP-users] IMP cannot find Modeller 9.10 script - Regular Expression problem?,
João Rodrigues
[IMP-users] IMP Survey 2012,
Charles Greenberg
[IMP-users] IMP Survey Reminder,
Charles Greenberg
[IMP-users] ImportError: No module named IMP,
Adhikari, Badri (MU-Student)
[IMP-users] Python wrapper error after IMP installation,
Adhikari, Badri (MU-Student)
[IMP-users] protein structure generation from sequences with IMP,
Adhikari, Badri (MU-Student)
[IMP-users] protein structure from amino acid sequences with IMP,
Adhikari, Badri (MU-Student)
[IMP-users] Regarding IMP run,
subhomoi borkotoky
[IMP-users] IMP issue regarding examples in web-ste: this is probably an expert level issue,
Adhikari, Badri (MU-Student)
[IMP-users] distance restraint,
damien . devos
[IMP-users] can generate structure from sequences. how to add contact information as restrain?,
Adhikari, Badri (MU-Student)
[IMP-users] looking for ab initio structure prediction examples,
Adhikari, Badri (MU-Student)
[IMP-users] struggling to make structure predictions,
Adhikari, Badri (MU-Student)
[IMP-users] Boost <= 1.36,
Daniel Russel
[IMP-users] model clustering,
damien . devos
[IMP-users] IMP.algebra.get_transformation_aligning_first_to_second,
unverdor
[IMP-users] No module named rmf,
Adhikari, Badri (MU-Student)
[IMP-users] pdb to restrains,
Adhikari, Badri (MU-Student)
[IMP-users] rmf/hdf5 format,
Adhikari, Badri (MU-Student)
[IMP-users] Restrains beads in EM enveloppe,
Benjamin SCHWARZ
[IMP-users] Computing presence densities out of configurationSets,
Benjamin SCHWARZ
[IMP-users] svn revision number,
Benjamin SCHWARZ
[IMP-users] IMP FAQ,
Daniel Russel
[IMP-users] Help: Troubleshooting CMake configuration errors.,
Vadim Patsalo
Re: [IMP-users] Help: Troubleshooting CMake configuration errors,
Vadim Patsalo
[IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Ben Webb
- Re: [IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Ben Webb
- Re: [IMP-users] Windows build,
Ben Webb
- Re: [IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Andrey Tovchigrechko
- Re: [IMP-users] Windows build,
Ben Webb
- Re: [IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Daniel Russel
- Re: [IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Ben Webb
- Re: [IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Ben Webb
- Re: [IMP-users] Windows build,
Tovchigrechko, Andrey
- Re: [IMP-users] Windows build,
Ben Webb
[IMP-users] Help- running IMP scripts,
Joseph Eschweiler
[IMP-users] IMP 2.0.0 has been released,
Daniel Russel
[IMP-users] building error linux 64 bits,
Ibai Irastorza
[IMP-users] restrainer representation problem,
Ibai Irastorza
[IMP-users] Help-symmetry operation,
Joseph Eschweiler
[IMP-users] how to integrate RMF with IMP.restrainer?,
Jan Kosinski
[IMP-users] problem with compiling IMP after a commit "add adaptors for taking particles to reduce need for typemaps",
Jan Kosinski
[IMP-users] Is ConnectivityRestraint really deprecated? What to use instead?,
Jan Kosinski
[IMP-users] ConnectivityRestraint evaluation fails,
Pia Unverdorben
[IMP-users] Compilation error of develop-version due to problem with shell?,
Pia Unverdorben
[IMP-users] Failed to build IMP,
Dan Cohen
[IMP-users] Atom not interpolated error when using do_global_fitting from multifit,
Dan Cohen
[IMP-users] Rotations and Euler angles - possibly wrong documentation/function names,
Dan Cohen
Re: [IMP-users] IMP-users Digest, Vol 30, Issue 6,
Barak Raveh
[IMP-users] e2pdb2mrc - how to get a map that is aligned to the PDB,
Dan Cohen
[IMP-users] Disabling logs in IMP,
Dan Cohen
[IMP-users] Installing IMP on Ubuntu 12.04,
Steven Howell
[IMP-users] IMP 2.1 release,
Daniel Russel
[IMP-users] How to represent a protein-protein interaction network in IMP,
Hongzhu Cui
[IMP-users] Installing IMP on Ubuntu,
Nan Zhao
[IMP-users] changing the default installed /usr/share/IMP path (IMP-2.1.1-1.el5.centos.x86_64.rpm/IMP-devel-2.1.1-1.el5.centos.x86_64.rpm),
Tru Huynh
[IMP-users] RNA / DNA in IMP?,
Barak Raveh
[IMP-users] remove DiameterRestraint,
harianto tjong
[IMP-users] Doxygen error with last version,
Ibai Irastorza
[IMP-users] RMF error while building,
Ibai Irastorza
[IMP-users] IMP 2.2.0 release,
Ben Webb
[IMP-users] (no subject),
Joseph Eschweiler
[IMP-users] problems when using multifit,
Fiona Bridget Naughton
[IMP-users] problem in installing IMP,
Pooja Dnyane
[IMP-users] Sampling and writing to pym/rmf,
Josh Bullock
Re: [IMP-users] Sampling and writing to pym/rmf (Barak Raveh),
Josh Bullock
Re: [IMP-users] Sampling and writing to pym/rmf (Josh Bullock),
Josh Bullock
Re: [IMP-users] Sampling and writing to pym/rmf (Barak Raveh) (Josh Bullock),
Josh Bullock
[IMP-users] getting the MCCGsampler to work,
Josh Bullock
Re: [IMP-users] getting the MCCGsampler to work (Josh Bullock),
Josh Bullock
[IMP-users] IMP 2.2.0 building (cmake): How to add dependencies in non-standard locations?,
Frank Thommen
[IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make`,
Frank Thommen
[IMP-users] IMP 2.2.1 release,
Ben Webb
[IMP-users] doxygen version problem ("too new") when building IMP 2.2.1,
Frank Thommen
[IMP-users] Wrong CMake warning when building IMP 2.2.1,
Frank Thommen
[IMP-users] Configuring IMP 2.2.1: HDF5 once found, twice not,
Frank Thommen
[IMP-users] converting .rmf to .pdb,
Josh Bullock
[IMP-users] IMP 2.3.0 release,
Ben Webb
[IMP-users] missing binaries?,
Joel Mackay
[IMP-users] IMP 2.3.1 release,
Ben Webb
[IMP-users] installation,
Joel Mackay
[IMP-users] Problems compiling IMP on mac OS X version 10.9.5,
Marco Di Stefano
[IMP-users] IMP 2.4.0 release,
Ben Webb
[IMP-users] IMP-CGAL4.5.2-Surface_mesh_simplification’ is not a namespace-name,
陈同
[IMP-users] how do I build working pmi rnapolii examples ?,
Isabelle Phan
[IMP-users] Problems with installing IMP on Ubuntu 15.04,
Dennis FoxLetterman
[IMP-users] IMP 2.5.0 release,
Ben Webb
[IMP-users] Visualizing entire scoring function (Optimization),
Hughes, Katelyn Jean
[IMP-users] restraint based on pre-calculated scores,
Jan Kosinski
[IMP-users] question about running PMI,
Jason Schmidberger
[IMP-users] question about PMI included.None.xl.db file,
Jason Schmidberger
[IMP-users] Conjugate Gradient optimizer with rigid bodies,
Karine VOLTZ
[IMP-users] installation issue: cgal version 10.dylib missing,
John Robinson
[IMP-users] Failed to build 1e6v example with multifit,
Mateusz Koryciński
[IMP-users] error during installation,
ashutosh srivastava
[IMP-users] em.MapDistanceTransform class,
Karine VOLTZ
[IMP-users] MP.em.EnvelopeFitRestraint class,
Karine VOLTZ
[IMP-users] Compiling IMP 2.5.0 on CentOS 7,
Novosielski, Ryan
[IMP-users] IMP 2.6.0 release,
Ben Webb
[IMP-users] slow MC optimizer,
Joseph Eschweiler
[IMP-users] IMP 2.6.1 release,
Ben Webb
[IMP-users] IMP 2.6.1/CentOS-7/Ninja (only) building issue,
Tru Huynh
[IMP-users] IMP 2.6.2 release,
Ben Webb
[IMP-users] ChimeraWriter,
Ibai Irastorza
[IMP-users] SAXS,
Georg Kempf
[IMP-users] save values of RestraintsScoringFunction to RMF,
Jan Kosinski
[IMP-users] ReplicaExchange: Could not find MPI. Using Serial Replica Exchange,
Julian
[IMP-users] ideal_helix as part of multiscale model,
Julian
[IMP-users] accuracy and get_average_distance_wrt_reference_structure(),
Julian
[IMP-users] crosslinking with multiple copies of subunits,
Josh Bullock
[IMP-users] IMP.pmi.restraints.em.GaussianEMRestraint vs IMP.em.EnvelopeFitRestraint,
Julian
[IMP-users] ideal_helix density,
Julian
[IMP-users] Upcoming joint IMP and NAMD/VMD workshop at UCSF next month,
Ben Webb
[IMP-users] SAXSISDRestaint,
Josh Bullock
[IMP-users] install from binaries on RHEL7,
Isabelle Phan
[IMP-users] rmf trajectory,
Julian
[IMP-users] RNA-protein crosslinking,
Genis Valentin
[IMP-users] Packing group of spheres,
Dushyant Sahoo
[IMP-users] IMP 2.7.0 release,
Ben Webb
[IMP-users] Geometrical Transformations and their effects in written files,
Kai Karius
[IMP-users] Sigmoidal crosslinks in IMP.pmi 2.7.0,
Fergal Duffy
[IMP-users] HDX-MS and DEER support,
Igor Dikiy
[IMP-users] IMP 2.8.0 release,
Ben Webb
[IMP-users] SOAP_SCORE,
Pablo Chacon
[IMP-users] rigid bodies and super rigid bodies,
מירב בריטברד
[IMP-users] MPI setup,
מירב בריטברד
[IMP-users] IMP bug - decorating floppy bodies as gaussians,
Fergal Duffy
[IMP-users] Floppy bodies,
Komjati Kornel
[IMP-users] run clustering.py on multiple stat files,
מירב בריטברד
[IMP-users] running imp with DNA sequence,
מירב בריטברד
[IMP-users] a problem with the updated IMP,
מירב בריטברד
[IMP-users] IMP: moving a gaussian decorated flexible bead,
Fergal Duffy
[IMP-users] Rigid body from multiple chains,
Komjati Kornel
[IMP-users] ExcludedVolumeSphere resolution,
Julian
[IMP-users] Defining Possible Interactions,
Komjati Kornel
[IMP-users] Correctly setting non-default temperatures in Brownian dynamics simulations,
Barak Raveh
[IMP-users] IMP 2.9.0 release,
Ben Webb
[IMP-users] Waiting for your response,
mariam ahmed
[IMP-users] Monte carlo temperature in ReplicaExchange0,
Genis Valentin
[IMP-users] multifit proteomics file,
Andrea Graziadei
[IMP-users] IMP 2.10.0 release,
Ben Webb
[IMP-users] IMP.pmi.macros.ReplicaExchange0,
Andrea Graziadei
[IMP-users] GaussianEMRestraint of Rigid Bodies,
Lenz, Swantje
[IMP-users] IMP 2.10.1 release,
Ben Webb
[IMP-users] naming subunits in IMP,
Merav Braitbard
[IMP-users] weights testing,
Andrea Graziadei
[IMP-users] Topology colors,
Daniel Ziemianowicz
[IMP-users] IMP 2.11.0 release,
Ben Webb
[IMP-users] IMP 2.11.1 release,
Ben Webb
[IMP-users] changing the python version in IMP,
Merav Braitbard
[IMP-users] CrossLinkTable,
Julian
[IMP-users] BuildModel 2 BuildSystem,
Marcell Miski
[IMP-users] Maximum distance restraint between spheres,
Altair Hernández Chinchilla
[IMP-users] Ambiguous restraints,
Francesco RAIMONDI
[IMP-users] Compiling a module out of tree,
Patrick Goetz
[IMP-users] Compiling an IMP module out of tree,
Goetz, Patrick G
[IMP-users] Error in Conjugate Gradient Optimization,
Altair Hernández Chinchilla
[IMP-users] mmcif creation with DNA,
Lenz, Swantje
[IMP-users] IMP 2.12.0 release,
Ben Webb
[IMP-users] EnvelopeScore and MapDistanceTransform,
Jan Kosinski
[IMP-users] frame 1 score inf,
Atefeh Rafiei
[IMP-users] localisation densities,
Andrea Graziadei
[IMP-users] Custom Hierarchy,
Altair Hernández Chinchilla
[IMP-users] restarting a run,
Andrea Graziadei
[IMP-users] Error when sampling antibody conformations using rrt_sample,
Fisher H.
[IMP-users] IMP DiameterRestraint,
Altair Hernández
[IMP-users] IMP 2.13.0 release,
Ben Webb
[IMP-users] Modeling the relation between two complexes with a common protein and linking region between,
Gorbea, Jose
[IMP-users] Problem with IMP.core.TransformationSymmetry,
Jan Kosinski
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Ben Webb
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Jan Kosinski
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Ben Webb
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Jan Kosinski
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Ben Webb
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Jan Kosinski
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Ben Webb
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Jan Kosinski
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Ben Webb
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Riccardo Pellarin
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Jan Kosinski
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Riccardo Pellarin
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Jan Kosinski
- Re: [IMP-users] Problem with IMP.core.TransformationSymmetry,
Ben Webb
[IMP-users] Issue with using SAXS Restraint in IMP,
Sumner, Jacob
[IMP-users] anaconda package update,
Andrea Graziadei
[IMP-users] Different initial model,
SoltaniKazemi, Elham
[IMP-users] Precision for systems with fixed bodies,
Atefeh Rafiei
[IMP-users] Coarse Grain PDB structure,
Altair Hernández
[IMP-users] Issue with Flexible Modeling Using PMI,
Jake Sumner
[IMP-users] SAXS restraint error,
Cameron Murray
[IMP-users] PMI with multiple PDBs,
Altair Hernández
[IMP-users] Suffle before sampling: fixed parts,
Altair Hernández
[IMP-users] Defining rigid bodies,
Altair Hernández
[IMP-users] imp_sampcon pyRMSD installation issue,
Gorbea, Jose
[IMP-users] Making restraints,
SoltaniKazemi, Elham
[IMP-users] Large spheres in output rmf3 files,
Gorbea, Jose
[IMP-users] IMP 2.14.0 release,
Ben Webb
[IMP-users] Setting coordinates from RMF,
Altair Hernández
[IMP-users] Missing frame during imp_sampcon,
Gorbea, Jose
[IMP-users] PMI crosslinks and state ambiguity,
Andrea Graziadei
[IMP-users] Specification of symmetry groups file for imp_sampcon --ambiguity option,
Jan Kosinski
[IMP-users] RRT Sample with DNA,
John Stiller
[IMP-users] ReplicaExchange error,
Altair Hernández
[IMP-users] Plotting XL restrains histograms from a symmetric complex on ChimeraX,
Gorbea, Jose
[IMP-users] IMP 2.15.0 release,
Ben Webb
[IMP-users] Normal Mode Analysis,
Altair Hernández
[IMP-users] extracting distance from CrossLinkingMassSpectrometryRestraint with state ambiguity,
Andrea Graziadei
[IMP-users] REX score,
Altair Hernández
[IMP-users] IMP Silencing output,
Altair Hernández
[IMP-users] Paralellizing REX,
Altair Hernández
[IMP-users] contact plots,
Andrea Graziadei
[IMP-users] Optimizing MCMC parameters in IMP,
Shruthi Viswanath
[IMP-users] IMP 2.16.0 release,
Ben Webb
[IMP-users] DNA modeling,
Altair Hernández
[IMP-users] Membrane Restraint,
Altair Hernández
[IMP-users] Returning original atom coordinates after sampling,
Altair Hernández
[IMP-users] MC temperature,
Altair Hernández
[IMP-users] Create topology from mmCIF,
Altair Hernández
[IMP-users] IMP 2.17.0 release,
Ben Webb
[IMP-users] Precision for integrative models,
Shruthi Viswanath
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