Re: [IMP-users] Specification of symmetry groups file for imp

Re: [IMP-users] Specification of symmetry groups file for imp_sampcon --ambiguity option

To: Jan Kosinski <>

Subject: Re: [IMP-users] Specification of symmetry groups file for imp_sampcon --ambiguity option

From: Shruthi Viswanath <>

Date: Fri, 26 Feb 2021 08:05:20 +0530

Cc: Help and discussion for users of IMP <>, Rakesh Ramachandran <>

Ben is right. Each line is a symmetry group (list of proteins that should be considered equivalent for RMSD calculation). It should work for general cases. Let us know there's a problem.

Best

Shruthi

On Fri, Feb 26, 2021 at 12:54 AM Jan Kosinski <" target="_blank">> wrote:

Hi Ben and all,

This actually just works for me, thanks for quick response!

And thanks Shruthi !

Best,
Jan

> On 25. Feb 2021, at 19:44, Ben Webb <" target="_blank">> wrote:
>
> On 2/25/21 6:40 AM, Jan Kosinski wrote:
>> What is the specification of the symmetry groups file for imp_sampcon
>> --ambiguity option?
>
> Looks like each line is just a list of equivalent subunits:
> https://github.com/salilab/imp-sampcon/blob/main/test/symminput/symm_groups.txt
>
> Shruthi (who wrote this code) or Rakesh (who's used it recently IIRC) may have more information.
>
> Ben
> --
> " target="_blank"> https://salilab.org/~ben/
> "It is a capital mistake to theorize before one has data."
> - Sir Arthur Conan Doyle
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