[IMP-users] can generate structure from sequences. how to add contact information as restrain?

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Subject: [IMP-users] can generate structure from sequences. how to add contact information as restrain?

From: "Adhikari, Badri (MU-Student)" <>

Date: Fri, 6 Jul 2012 17:36:32 +0000

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Reply-to: Help and discussion for users of IMP <>

Hello imp users and experts,

I am using edited version of http://www.salilab.org/~drussel/unstructured/imp_doc/atom_examples.html#structure_from_sequence to generate structures from amino-acid sequences. This example uses IMP.atom.CHARMMTopology.

I would like to feed contact information as a restrain to guide the prediction process.

1. What should be the approach? Which classes/functions should be used?

2. Are there any such examples?

Sincerely,

Badri Adhikari

CS Graduate Student,

University of Missouri-Columbia,

Columbia, Missouri