(You can also look at the actual modeling scripts we used for our
papers, at http://integrativemodeling.org/systems/, but these don't tend
to be as nicely commented and described ;)
The 'examples' directory in each IMP module is typically used to
demonstrate the use of IMP functions and classes - there's rarely space
or time in a short example to model a "real" system.
Ben
--
http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle