Re: [IMP-users] How to represent a protein-protein interaction network in IMP

Hi, Daniel,

Many Thanks.

We would like to input a network, which means a set of binary proteins with interaction, and hope IMP could produce a graph of the network. Also, we want to represent some biological restraints on the protein-protein interaction we generalized in IMP, reduce some interactions and optimize the network.

So, could you give me some more advice?

Thank,again,

Hongzhu

Hongzhu Cui, PhD Student

University of Missouri

Informatics Institute

246 Engineering Building West

Columbia, MO 65211

phone: +1(573)239-1592

e-mail: " target="_blank">;

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2013/11/1 Daniel Russel <" target="_blank">>

Can you provide a bit more information about what you want to do with the network? Are you looking to find a structure? Or produce a graph of the network at the end?

The connectivity restraints may be something you want to look at core::ConnectivityRestraint and core::MSConnectivityRestraint and atom::create_connectivity_restraint().

On Thu, Oct 31, 2013 at 10:13 PM, Hongzhu Cui <" target="_blank">> wrote:

Hi, all,

Recently, I have a project with IMP. Basically, we need to represent a protein-protein interaction network in IMP, and then we add some restraints to see how we could optimize this network. But I stuck on this problem, and I did not find any similar example in the Manual documentation.

Thanks & Regards,
Hongzhu

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