Re: [IMP-users] rigid bodies and super rigid bodies

To: Help and discussion for users of IMP <>

Subject: Re: [IMP-users] rigid bodies and super rigid bodies

From: Riccardo Pellarin <>

Date: Thu, 26 Oct 2017 21:40:57 +0200

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Cc: מירב בריטברד <>

Yes, in fact note that Ben pointed you to the develop version of the tutorial (not the master branch, which is not yet updated)

Riccardo Pellarin, PhD

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Institut Pasteur

CNRS UMR 3528

25, rue du Docteur Roux
75724 Paris Cedex 15, France

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On Thu, Oct 26, 2017 at 8:44 PM, Ben Webb <" target="_blank">> wrote:

On 10/26/17 2:16 AM, מירב בריטברד wrote:

I prefer to use BuildSystem macro, because it seems more convenient and because BuildModel is deprecated.
However I don't find any examples that uses the BuildSystem with cross links and EM restrains.
Specifically, how can I extract the representation from BuildSystemso can I pass it to the restrains?

BuildSystem returns the root hierarchy, which you then pass to each of your restraints. See https://github.com/salilab/imp_tutorial/blob/develop/rnapolii/modeling/modeling.py for an example.

Ben
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"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle
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