I was wondering if the resolution parameter in
IMP.pmi.restraints.stereochemistry.ExcludedVolumeSphere should depend on
the scale of the model. In most scripts I've seen on github, the
resolution is set to 10. But I was thinking if Beadsize is 50 or 100,
maybe it would make more sense to increase this parameter?
The absolute value of the resolution is a bit misleading - it should
really be thought of as more of an enumeration where resolution=0
corresponds to atomic resolution, resolution=1 to 1 residue per bead,
and resolution=10 to >1 residue per bead. It shouldn't be necessary to
change resolution when beadsize is changed.
Ben
--
https://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle