[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [IMP-users] Disabling logs in IMP

You can control logging at both configure time and at runtime. 

To build IMP without logging support (which can make IMP faster than just disabling logging) you can
- add -DIMP_MAX_LOG=SILENT
- rebuild IMP

to control it at runtime you can
- add IMP::base::set_log_level(IMP::base::SILENT) (or replace :: with . for python)
- add --log_level=0 as a command line argument to many IMP executables

That said, the logging you see is something that got turned on due to some issues we were debugging with atom::Selection and perhaps should go away.


On Aug 4, 2013, at 2:04 AM, Dan Cohen <">> wrote:

Hello all,

I would like first to say that IMP has been a great help for me and I have been using
it extensively in my current project. Thank you!

I just pulled the latest IMP from the git and built it after doing :

cmake ../imp-source/ -DCMAKE_BUILD_TYPE=Release

Suddenly when running code using IMP (python bindings) I'm getting tons
of logs (for each creation/destruction of a Model object for example)

I thought I was building in release so why do I get all of those logs? Can I disable them?

You can see below the output of the cmake command.
I'm using cmake version 2.8.7

Thank you,
Dany

Example for some logs :

        Matched Atom N of residue 525 with [] and 1
      end search
      begin search:
        Matched Atom CA of residue 525 with [] and 1
      end search
      begin search:
        Matched Atom C of residue 525 with [] and 1
      end search
      begin search:
        Matched Atom O of residue 525 with [] and 1
      end search
      begin search:
        Matched Atom CB of residue 525 with [] and 1
      end search
      begin search:
        Matched Atom CG of residue 525 with [] and 1
      end search
      begin search:
        Matched Atom CD of residue 525 with [] and 1
      end search
      Matched PRO with [4365, 4367, 4368, 4369, 4370, 4371, 4372] and 1
    end search
    Matched Chain E with [0, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, ,...] and 1
  end search
  Matched 1oel_E.pdb:  with [0, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, ,...] and 1
end search

The cmake output :

$ cmake ../imp-source/ -DCMAKE_BUILD_TYPE=Release
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Running check_common_problems
-- Running setup_cmake
-- Wrong doxygen version at /usr/bin/doxygen. Found 1.7.6.1, but needed 1.8.4
-- Will download doxygen from http://ftp.stack.nl/pub/users/dimitri/doxygen-1.8.4.linux.bin.tar.gz
-- Running setup_doxygen
-- Python version is 2.7
-- Found PythonLibs: /usr/lib/libpython2.7.so (found suitable exact version "2.7.3")
-- Running setup
-- Running setup_containers
-- Running setup_all
-- Running setup_module_alias for compatibility
-- Setting up alias for module base as compatibility
-- Running setup_module_alias for kernel
-- Setting up alias for module kernel as
-- Boost version: 1.46.1
-- Found the following Boost libraries:
--   system
--   filesystem
--   thread
--   program_options
-- Performing Test IMP_COMPILER_HAS_AUTO
-- Performing Test IMP_COMPILER_HAS_AUTO - Failed
-- Performing Test IMP_COMPILER_HAS_DEBUG_VECTOR
-- Performing Test IMP_COMPILER_HAS_DEBUG_VECTOR - Success
-- checking for module 'gperftools'
--   package 'gperftools' not found
GPerfTools not found
-- checking for module 'log4cxx'
--   package 'log4cxx' not found
-- Found LOG4CXX
-- Performing Test Log4CXX_found
-- Performing Test Log4CXX_found - Success
-- Found Log4CXX
-- checking for module 'tcmalloc_heapchecker'
--   package 'tcmalloc_heapchecker' not found
TCMalloc_HeapChecker not found
-- checking for module 'tcmalloc_heapprofiler'
--   package 'tcmalloc_heapprofiler' not found
TCMalloc_HeapProfiler not found
-- Running generate paths.cpp
Configuring module base ... yes
-- Running setup_swig_wrappers base
Configuring module benchmark ... yes
-- Running setup_swig_wrappers benchmark
-- Build type: Release
-- USING CXXFLAGS = ' -O3 -DNDEBUG'
-- USING EXEFLAGS = '  '
-- Targetting Unix Makefiles
-- Using /usr/bin/c++ compiler.
-- Updating CMAKE_CXX_FLAGS
Configuring module cgal ... yes
-- Running setup_swig_wrappers cgal
Configuring module kmeans ... yes
-- Running setup_swig_wrappers kmeans
-- Found MPI_C: /usr/local/lib/openmpi-1.4.1/lib/libmpi.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-rte.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so
-- Found MPI_CXX: /usr/local/lib/openmpi-1.4.1/lib/libmpi_cxx.so;/usr/local/lib/openmpi-1.4.1/lib/libmpi.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-rte.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so
-- MPI found
Configuring module mpi ... yes
-- Running setup_swig_wrappers mpi
Configuring module test ... yes
-- Running setup_swig_wrappers test
-- checking for module 'ann'
--   package 'ann' not found
ANN not found
Configuring module algebra ... yes
-- Running setup_swig_wrappers algebra
Configuring module kernel ... yes
-- Running setup_swig_wrappers kernel
Configuring module display ... yes
-- Running setup_swig_wrappers display
-- checking for module 'gsl'
--   found gsl, version 1.15
-- Found GSL
-- Performing Test GSL_found
-- Performing Test GSL_found - Success
-- Found GSL
Configuring module gsl ... yes
-- Running setup_swig_wrappers gsl
Configuring module parallel ... yes
-- Running setup_swig_wrappers parallel
Configuring module score_functor ... yes
-- Running setup_swig_wrappers score_functor
Configuring module statistics ... yes
-- Running setup_swig_wrappers statistics
Configuring module system ... yes
-- Running setup_swig_wrappers system
Configuring module core ... yes
-- Running setup_swig_wrappers core
Configuring module container ... yes
-- Running setup_swig_wrappers container
Configuring module modeller ... yes
-- Running setup_swig_wrappers modeller
Configuring module symmetry ... yes
-- Running setup_swig_wrappers symmetry
Configuring module atom ... yes
-- Running setup_swig_wrappers atom
Configuring module scratch ... yes
-- Running setup_swig_wrappers scratch
Configuring module em ... yes
-- Running setup_swig_wrappers em
Configuring module kinematics ... yes
-- Running setup_swig_wrappers kinematics
Configuring module misc ... yes
-- Running setup_swig_wrappers misc
-- Performing Test RMF_environment
-- Performing Test RMF_environment - Failed
-- checking for module 'RMF'
--   package 'RMF' not found
-- Building internal RMF
-- checking for module 'log4cxx'
--   package 'log4cxx' not found
-- Found Log4CXX
-- Logging enabled
-- Found HDF5: debug;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5.so
-- Found SWIG: swig (found version "2.0.4")
-- /usr/include/python2.7
-- benchmark_size
-- benchmark_rmf
-- Found Doxygen: /usr/bin/doxygen
-- Updating paths for RMF <>
Configuring module rmf ... yes
-- Running setup_swig_wrappers rmf
Configuring module rotamer ... yes
-- Running setup_swig_wrappers rotamer
Configuring module saxs ... yes
-- Running setup_swig_wrappers saxs
-- checking for module 'hdf5'
--   package 'hdf5' not found
-- Found HDF5
-- Performing Test HDF5_found
-- Performing Test HDF5_found - Success
-- Found HDF5
Configuring module domino ... yes
-- Running setup_swig_wrappers domino
-- checking for module 'cholmod'
--   package 'cholmod' not found
CHOLMOD not found
-- checking for module 'eigen3'
--   package 'eigen3' not found
Eigen3 not found
Configuring module isd ... Eigen3 not found
    Different data/build_info/sorted_modules
    -isd
Module IMP.isd disabled
Configuring module restrainer ... yes
-- Running setup_swig_wrappers restrainer
-- checking for module 'fftw3'
--   found fftw3, version 3.3.3
-- Found FFTW3
-- Performing Test FFTW3_found
-- Performing Test FFTW3_found - Success
-- Found FFTW3
-- checking for module 'opencv21'
--   package 'opencv21' not found
OpenCV21 not found
-- checking for module 'opencv22'
--   package 'opencv22' not found
OpenCV22 not found
em2d is disabled
    Different data/build_info/sorted_modules
    -em2d
Module IMP.em2d disabled
-- checking for module 'exampledependency'
--   package 'exampledependency' not found
ExampleDependency not found
Configuring module example ... yes
-- Running setup_swig_wrappers example
Configuring module multifit ... yes
-- Running setup_swig_wrappers multifit
Configuring module pepdock ... yes
-- Running setup_swig_wrappers pepdock
-- checking for module 'libtau'
--   package 'libtau' not found
libTau not found
Configuring module cnmultifit ... libTau not found
    Different data/build_info/sorted_modules
    -cnmultifit
Module IMP.cnmultifit disabled
-- Running setup_swig_dependencies
-- Creating thread pool with 16
Configuring application EMageFit ... no
    Different data/build_info/applications
    -EMageFit
Application EMageFit disabled
Configuring application cnmultifit_tools ... no
    Different data/build_info/applications
    -cnmultifit_tools
Application cnmultifit_tools disabled
Configuring application em_tools ... yes
Configuring application example_app ... yes
Configuring application foxs ... yes
Configuring application integrative_docking ... yes
Configuring application ligand_score ... yes
Configuring application multifit_tools ... yes
Configuring application pdb_tools ... yes
Configuring application rmf_tools ... yes
Configuring application saxs_merge ... no
    Different data/build_info/applications
    -saxs_merge
Application saxs_merge disabled
Configuring application saxs_tools ... yes
-- Running setup_doxygen_config
-- Running setup_imppy
-- Configuring done

_______________________________________________
IMP-users mailing list
">
https://salilab.org/mailman/listinfo/imp-users