I ran modeling.py multiple times and created different output folders
that each of them contain a stat file. Now I want to run clustering.py
on all the stat files in the different folders, how can I do it?
Assuming you mean you want to merge multiple runs into one large
ensemble and cluster the whole thing using the AnalysisReplicaExchange0
macro, just set the merge_directories argument to a list of all the
directories containing your stat files (and RMF trajectories).