Re: [IMP-users] changing the default installed /usr/share/IMP path (IMP-2.1.1-1.el5.centos.x86_64.rpm/IMP-devel-2.1.1-1.el5.centos.x86_64.rpm)

[Tru Huynh <>]

On Tue, Dec 03, 2013 at 12:20:01PM -0800, Daniel Russel wrote:
> You should be able to use the IMP_DATA environment variable to change the
> search path. Define it to be  /c5/shared/imp/2.1.1-1.el5.
> centos.x86_64/share/IMP.
> 
That was it :D

I also have to export IMP_EXAMPLE_DATA to /c5/shared/imp/2.1.1-1.el5.centos.x86_64/share/doc/IMP-2.1.1/examples

Now http://www.salilab.org/~drussel/unstructured/imp_doc/atom_examples.html works :D

[tru@sillage imp]$ python dope.py 
creating representation
creating DOPE score function
Failed to find type for #373 "OXT" (O) #54 "ASP"
Reading 158 by 158 from file /c5/shared/imp/2.1.1-1.el5.centos.x86_64/share/IMP/score_functor/dope_score.lib
PMF table entries have 30 bins with width 0.5
DOPE SCORE ::WARNING  Method double IMP::kernel::Model::evaluate(bool, bool) is deprecated. WARNING: Use a scoring function or Model::update() instead.
begin Model 0::update:
  begin Model 0::do_set_has_required_score_states:
    begin Model 0::do_set_has_required_score_states:
      begin get_update_order:
<...>
  end Model Restraints scoring::evaluate
end Model Restraints::evaluate
 -4045.79361447
begin Model 0::do_destroy:
  Destroying model
end Model 0::do_destroy

> Let me know if that works or not.

Thanks a lot, now we can let the users choose which IMP versions they want!

Best regards,

Tru
-- 
Dr Tru Huynh          | http://www.pasteur.fr/recherche/unites/Binfs/
">mailto: | tel/fax +33 1 45 68 87 37/19
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