Re: [IMP-users] Custom Hierarchy

[Ben Webb <>]

On 2/6/20 7:25 AM, Altair Hernández Chinchilla wrote:
> I am currently working with no PDB structure, but with a custom artifact 
> proteins made of concatenated beads (IMP spheres with volume). I would 
> like to apply and integrate different type of data on it (cross linking 
> - mass spectrometry, yeast two-hybrid, and cryoEM). I would like to ask 
> you if should I work with hierarchies

Use whatever works best for you. We generally work with hierarchies 
because it makes it easier to select groups of related structure 
particles (e.g. with IMP.atom.Selection) (and certainly PMI uses them 
extensively) but no need to use them for most restraints.

	Ben
--
                      https://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
	- Sir Arthur Conan Doyle