IMP-users Mailing List (by date)

Thread Index

[IMP-users] fail optimization 2010/04/06
- From: Harianto Tjong <htjong@usc.edu>
Re: [IMP-users] fail optimization 2010/04/08
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] fail optimization 2010/04/08
- From: Harianto Tjong <htjong@usc.edu>
[IMP-users] error while loading shared libraries: libimp_saxs.so: 2010/04/09
- From: prabhakar g <prabha.iisc@googlemail.com>
Re: [IMP-users] error while loading shared libraries: libimp_saxs.so: 2010/04/09
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] error while loading shared libraries: libimp_saxs.so: 2010/04/12
- From: prabhakar g <prabha.iisc@googlemail.com>
Re: [IMP-users] fail optimization 2010/04/19
- From: Ben Webb <ben@salilab.org>
[IMP-users] combine IMP.atom.Selectors ? 2010/07/15
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] combine IMP.atom.Selectors ? 2010/07/15
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] combine IMP.atom.Selectors ? 2010/07/15
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] combine IMP.atom.Selectors ? 2010/07/15
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Binary installation of IMP 1.0 on Macbook Pro OSX 10.6.3 snowleopard 2010/07/19
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] Questions about example script local_fitting.py 2010/07/19
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] Questions about example script local_fitting.py 2010/07/19
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Questions about example script local_fitting.py 2010/07/19
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Binary installation of IMP 1.0 on Macbook Pro OSX 10.6.3 snowleopard 2010/07/19
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Questions about example script local_fitting.py 2010/07/19
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] Questions about example script local_fitting.py 2010/07/20
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] IMP.atom.read_pdb confusing error message when not finding file 2010/07/20
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] pdb parser issue in IMP.atom.read_pdb 2010/07/20
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] IMP.atom.read_pdb confusing error message when not finding file 2010/07/20
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] pdb parser issue in IMP.atom.read_pdb 2010/07/20
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Questions about example script local_fitting.py 2010/07/21
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] Questions about example script local_fitting.py 2010/07/21
- From: Friedrich Foerster <foerster@biochem.mpg.de>
[IMP-users] basic map handling 2010/07/22
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] A remark concerning software design and the get_leaves() function 2010/07/22
- From: Benjamin SCHWARZ <meow@agat.net>
[IMP-users] problems with a sample script (basic IMP optimization) 2010/07/23
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/23
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/23
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/26
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/26
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/27
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/27
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/27
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/27
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/28
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/28
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] problems with a sample script (basic IMP optimization) 2010/07/28
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] A remark concerning software design and the get_leaves() function 2010/07/30
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] A remark concerning software design and the get_leaves() function 2010/07/31
- From: Benjamin schwarz <schwarz.ben@gmail.com>
Re: [IMP-users] basic map handling 2010/08/01
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] basic map handling 2010/08/01
- From: Keren Lasker <kerenl@salilab.org>
[IMP-users] ExcludedVolumeRestraint : meaning of the score 2010/08/02
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] basic map handling 2010/08/02
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] basic map handling 2010/08/02
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] basic map handling 2010/08/02
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] basic map handling 2010/08/02
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] ExcludedVolumeRestraint : meaning of the score 2010/08/02
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] basic map handling 2010/08/03
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] about rotations 2010/08/06
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] about rotations 2010/08/06
- From: Keren Lasker <kerenl@salilab.org>
[IMP-users] A couple of naïve questions concerning IMP.Model 2010/08/06
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] about rotations 2010/08/06
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] A couple of naïve questions concerning IMP.Model 2010/08/06
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] ExcludedVolumeRestraint : meaning of the score 2010/08/09
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] ExcludedVolumeRestraint : meaning of the score 2010/08/09
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] ExcludedVolumeRestraint : meaning of the score 2010/08/09
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] ExcludedVolumeRestraint : meaning of the score 2010/08/09
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] CG and MC.set_local_optimizer(CG) 2010/08/12
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] CG and MC.set_local_optimizer(CG) 2010/08/12
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] CG and MC.set_local_optimizer(CG) 2010/08/12
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] IMP svn compiling issues Mac OS X 10.6 fink-64 2010/09/23
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] IMP svn compiling issues Mac OS X 10.6 fink-64 2010/09/23
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] IMP svn compiling issues Mac OS X 10.6 fink-64 2010/09/27
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] IMP svn compiling issues Mac OS X 10.6 fink-64 2010/09/27
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] installing within python version 2.6 2010/10/08
- From: jeremy adler <jeremyeadler@gmail.com>
Re: [IMP-users] installing within python version 2.6 2010/10/08
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] installing within python version 2.6 2010/10/11
- From: Ben Webb <ben@salilab.org>
[IMP-users] Error of using ConjugateOptimizer to optimize a Modeller model 2010/10/27
- From: Jianlin Cheng <jianlin.cheng@gmail.com>
Re: [IMP-users] Error of using ConjugateOptimizer to optimize a Modeller model 2010/10/27
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Error of using ConjugateOptimizer to optimize a Modeller model 2010/10/28
- From: Jianlin Cheng <jianlin.cheng@gmail.com>
[IMP-users] imp scons install problem 2010/11/25
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] imp scons install problem 2010/11/25
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] imp scons install problem 2010/11/25
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] imp scons install problem 2010/11/25
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] import fails 2010/12/10
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] import fails 2010/12/10
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] import fails 2010/12/10
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] import fails 2010/12/10
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] import fails 2010/12/10
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] import fails 2010/12/10
- From: Dina Schneidman <duhovka@gmail.com>
Re: [IMP-users] import fails 2010/12/10
- From: Dina Schneidman <dina@salilab.org>
[IMP-users] add_partial_profiles 2010/12/12
- From: Robert Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] add_partial_profiles 2010/12/12
- From: Dina Schneidman <duhovka@gmail.com>
Re: [IMP-users] add_partial_profiles 2010/12/12
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] import fails 2010/12/13
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] numerical bug 2010/12/13
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] numerical bug 2010/12/13
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] import fails 2010/12/13
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] add_partial_profiles 2010/12/13
- From: Dina Schneidman <dina@salilab.org>
[IMP-users] single_prot_fft_fit 2010/12/14
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] good coding habits 2011/01/13
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] good coding habits 2011/01/13
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] good coding habits 2011/01/13
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] good coding habits 2011/01/13
- From: Ben Webb <ben@salilab.org>
[IMP-users] running error 2011/01/20
- From: Robert Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] running error 2011/01/20
- From: Robert Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] running error 2011/01/20
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] running error 2011/01/20
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] add_partial_profiles 2011/01/21
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] add_partial_profiles 2011/01/21
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
[IMP-users] stable nightly build 2011/01/21
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
[IMP-users] compilation bus error 2011/01/21
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] compilation bus error 2011/01/21
- From: "R. Bryn Fenwick" <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] compilation bus error 2011/01/21
- From: "R. Bryn Fenwick" <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] compilation bus error 2011/01/21
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] compilation bus error 2011/01/22
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] compilation bus error 2011/01/22
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] compilation bus error 2011/01/23
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] compilation bus error 2011/01/23
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] compilation bus error 2011/01/24
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
[IMP-users] calculating chi squared 2011/01/24
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] calculating chi squared 2011/01/24
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
Re: [IMP-users] calculating chi squared 2011/01/24
- From: Robert Brynmor Fenwick <robert.fenwick@irbbarcelona.org>
[IMP-users] restraint set 2011/01/24
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] restraint set 2011/01/24
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Question about conditional restraints 2011/02/01
- From: Davide Bau <davide.bau@gmail.com>
Re: [IMP-users] Question about conditional restraints 2011/02/01
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Question about conditional restraints 2011/02/02
- From: Davide Bau <davide.bau@gmail.com>
[IMP-users] how to transcode voxel index vidx to voxel dim index i, j, k ? 2011/02/04
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] how to transcode voxel index vidx to voxel dim index i, j, k ? 2011/02/04
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] how to transcode voxel index vidx to voxel dim index i, j, k ? 2011/02/04
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] how to transcode voxel index vidx to voxel dim index i, j, k ? 2011/02/04
- From: Keren Lasker <kerenl@salilab.org>
[IMP-users] is there an easy way in imp to get the residue type using a 1 letter code? 2011/02/04
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] is there an easy way in imp to get the residue type using a 1 letter code? 2011/02/04
- From: Ben Webb <ben@salilab.org>
[IMP-users] algebra::Vector3Ds -> atom::Hierarchy 2011/02/13
- From: Keren Lasker <kerenl@salilab.org>
[IMP-users] Symmetry 2011/03/11
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] Symmetry 2011/03/12
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/12
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] IMP-users Digest, Vol 10, Issue 2 2011/03/13
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] erosion and dilation for EM (mask) maps ? 2011/03/14
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] How to : Access chain properties such as chain ID. Access particle properties. 2011/03/22
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] How to : Access chain properties such as chain ID. Access particle properties. 2011/03/22
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] How to : Access chain properties such as chain ID. Access particle properties. 2011/03/22
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] How to : Access chain properties such as chain ID. Access particle properties. 2011/03/22
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] How to : Access chain properties such as chain ID. Access particle properties. 2011/03/22
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] How to : Access chain properties such as chain ID. Access particle properties. 2011/03/22
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] a remark concerning chains in a hierarchy returned by read_pdb 2011/04/04
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] a remark concerning chains in a hierarchy returned by read_pdb 2011/04/04
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Question about conditional restraints 2011/04/04
- From: Davide Baù <dbau@cipf.es>
Re: [IMP-users] Question about conditional restraints 2011/04/04
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Strange Pair Restraint behaviour 2011/04/10
- From: Iain Moal <Iain.Moal@cancer.org.uk>
Re: [IMP-users] Strange Pair Restraint behaviour 2011/04/10
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] IMP.hdf5 changes 2011/04/22
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] [Coarse grain modeling] a bunch of questions and comments regarding the nup84 cg example 2011/06/23
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] [Coarse grain modeling] a bunch of questions and comments regarding the nup84 cg example 2011/06/23
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] [Coarse grain modeling] a bunch of questions and comments regarding the nup84 cg example 2011/06/24
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] [Coarse grain modeling] a bunch of questions and comments regarding the nup84 cg example 2011/06/24
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Trying to use MultiFit but I have problems with installing/running IMP 2011/07/08
- From: Tolun, Gökhan <gtolun@ad.unc.edu>
Re: [IMP-users] Trying to use MultiFit but I have problems with installing/running IMP 2011/07/08
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Trying to use MultiFit but I have problems with installing/running IMP 2011/07/12
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] Trying to use MultiFit but I have problems with installing/running IMP 2011/07/12
- From: Keren Lasker <kerenl@salilab.org>
Re: [IMP-users] Trying to use MultiFit but I have problems with installing/running IMP 2011/07/12
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] Trying to use MultiFit but I have problems with installing/running IMP 2011/07/12
- From: Keren Lasker <kerenl@salilab.org>
[IMP-users] MCCGsampler.set_number_of_attempts 2011/08/09
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] MCCGsampler.set_number_of_attempts 2011/08/09
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] MCCGsampler.set_number_of_attempts 2011/08/09
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] coarse models with MCCG sampler : biased ? 2011/09/14
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] get_connected_pairs 2011/09/15
- From: Pia Unverdorben <unverdor@biochem.mpg.de>
Re: [IMP-users] get_connected_pairs 2011/09/15
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] coarse models with MCCG sampler : biased ? 2011/09/15
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] coarse models with MCCG sampler : biased ? 2011/09/20
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] coarse models with MCCG sampler : biased ? 2011/09/20
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] coarse models with MCCG sampler : biased ? 2011/09/20
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] IMP.restrainer examples 2011/09/20
- From: Jascha Casadio <jascha.casadio@upf.edu>
[IMP-users] How to use IMP 2011/09/29
- From: 张春雷 <chunleizhang.pku@gmail.com>
Re: [IMP-users] How to use IMP 2011/09/29
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP-1.0-Stable Installation Ubuntu 10.04 Help 2011/10/11
- From: Martin Turk <turk@lmb.uni-muenchen.de>
Re: [IMP-users] IMP-1.0-Stable Installation Ubuntu 10.04 Help 2011/10/11
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] does IMP.algebra.get_transformation_aligning_first_to_second minimize RMSD ? 2011/10/20
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] IMP cannot find Modeller 9.10 script - Regular Expression problem? 2011/10/20
- From: João Rodrigues <j.rodrigues@uu.nl>
Re: [IMP-users] IMP cannot find Modeller 9.10 script - Regular Expression problem? 2011/10/20
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP cannot find Modeller 9.10 script - Regular Expression problem? 2011/10/20
- From: João Rodrigues <j.rodrigues@uu.nl>
Re: [IMP-users] IMP cannot find Modeller 9.10 script - Regular Expression problem? 2011/10/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP cannot find Modeller 9.10 script - Regular Expression problem? 2011/10/23
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] IMP cannot find Modeller 9.10 script - Regular Expression problem? 2011/10/23
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] IMP Survey 2012 2012/03/08
- From: Charles Greenberg <cgreen@salilab.org>
[IMP-users] IMP Survey Reminder 2012/03/12
- From: Charles Greenberg <cgreen@salilab.org>
[IMP-users] ImportError: No module named IMP 2012/03/28
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] ImportError: No module named IMP 2012/03/28
- From: Ben Webb <ben@salilab.org>
[IMP-users] Python wrapper error after IMP installation 2012/04/10
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] Python wrapper error after IMP installation 2012/04/10
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] protein structure generation from sequences with IMP 2012/04/10
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] protein structure generation from sequences with IMP 2012/04/10
- From: Ben Webb <ben@salilab.org>
[IMP-users] protein structure from amino acid sequences with IMP 2012/04/12
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] protein structure from amino acid sequences with IMP 2012/04/13
- From: Ben Webb <ben@salilab.org>
[IMP-users] Regarding IMP run 2012/04/25
- From: subhomoi borkotoky <subhomoy.bk@gmail.com>
Re: [IMP-users] Regarding IMP run 2012/04/26
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] IMP issue regarding examples in web-ste: this is probably an expert level issue 2012/05/03
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] IMP issue regarding examples in web-ste: this is probably an expert level issue 2012/05/03
- From: Ben Webb <ben@salilab.org>
[IMP-users] distance restraint 2012/06/30
- From: damien.devos@cos.uni-heidelberg.de
Re: [IMP-users] distance restraint 2012/06/30
- From: Ben Webb <ben@salilab.org>
[IMP-users] can generate structure from sequences. how to add contact information as restrain? 2012/07/06
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] can generate structure from sequences. how to add contact information as restrain? 2012/07/09
- From: Ben Webb <ben@salilab.org>
[IMP-users] looking for ab initio structure prediction examples 2012/07/24
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] looking for ab initio structure prediction examples 2012/07/24
- From: Ben Webb <ben@salilab.org>
[IMP-users] struggling to make structure predictions 2012/08/06
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
[IMP-users] Boost <= 1.36 2012/08/07
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] struggling to make structure predictions 2012/08/07
- From: Ben Webb <ben@salilab.org>
[IMP-users] model clustering 2012/08/14
- From: damien.devos@cos.uni-heidelberg.de
Re: [IMP-users] model clustering 2012/08/14
- From: Keren Lasker <kerenl@salilab.org>
[IMP-users] IMP.algebra.get_transformation_aligning_first_to_second 2012/08/22
- From: unverdor@biochem.mpg.de
[IMP-users] No module named rmf 2012/08/27
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] No module named rmf 2012/08/27
- From: Ben Webb <ben@salilab.org>
[IMP-users] pdb to restrains 2012/08/28
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] pdb to restrains 2012/08/28
- From: Ben Webb <ben@salilab.org>
[IMP-users] rmf/hdf5 format 2012/08/29
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [IMP-users] rmf/hdf5 format 2012/08/29
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP.algebra.get_transformation_aligning_first_to_second 2012/08/30
- From: Ben Webb <ben@salilab.org>
[IMP-users] Restrains beads in EM enveloppe 2012/09/21
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] Computing presence densities out of configurationSets 2012/10/03
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
[IMP-users] svn revision number 2012/10/05
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] svn revision number 2012/10/05
- From: Davide Baù <davide.bau@gmail.com>
Re: [IMP-users] svn revision number 2012/10/05
- From: Benjamin SCHWARZ <schwarz.ben@gmail.com>
Re: [IMP-users] svn revision number 2012/10/05
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] svn revision number 2012/10/05
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] svn revision number 2012/10/05
- From: Davide Baù <davide.bau@gmail.com>
Re: [IMP-users] svn revision number 2012/10/05
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP FAQ 2012/12/21
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Help: Troubleshooting CMake configuration errors. 2013/03/19
- From: Vadim Patsalo <patsalo@scripps.edu>
Re: [IMP-users] Help: Troubleshooting CMake configuration errors. 2013/03/19
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Help: Troubleshooting CMake configuration errors 2013/03/19
- From: Vadim Patsalo <patsalo@scripps.edu>
Re: [IMP-users] Help: Troubleshooting CMake configuration errors 2013/03/19
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Help: Troubleshooting CMake configuration errors 2013/03/19
- From: Vadim Patsalo <patsalo@scripps.edu>
Re: [IMP-users] Help: Troubleshooting CMake configuration errors 2013/03/19
- From: Ben Webb <ben@salilab.org>
[IMP-users] Windows build 2013/03/21
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/03/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Windows build 2013/03/21
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/03/22
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Windows build 2013/03/26
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Windows build 2013/03/26
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/03/27
- From: Andrey Tovchigrechko <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/03/27
- From: Ben Webb <ben@salilab.org>
[IMP-users] Help- running IMP scripts 2013/03/28
- From: Joseph Eschweiler <joeesch@umich.edu>
Re: [IMP-users] Help- running IMP scripts 2013/03/28
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Help- running IMP scripts 2013/03/29
- From: Joseph Eschweiler <joeesch@umich.edu>
Re: [IMP-users] Help- running IMP scripts 2013/03/29
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Windows build 2013/04/04
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/04/04
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Windows build 2013/04/04
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/04/04
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/04/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Windows build 2013/04/04
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/04/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Windows build 2013/04/04
- From: "Tovchigrechko, Andrey" <atovtchi@jcvi.org>
Re: [IMP-users] Windows build 2013/04/04
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.0.0 has been released 2013/04/29
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] building error linux 64 bits 2013/05/08
- From: Ibai Irastorza <ibai.irastorza@cos.uni-heidelberg.de>
Re: [IMP-users] building error linux 64 bits 2013/05/08
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] building error linux 64 bits 2013/05/08
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] building error linux 64 bits 2013/05/08
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] building error linux 64 bits 2013/05/10
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] building error linux 64 bits 2013/05/13
- From: Ben Webb <ben@salilab.org>
[IMP-users] restrainer representation problem 2013/05/14
- From: Ibai Irastorza <ibai.irastorza@cos.uni-heidelberg.de>
Re: [IMP-users] restrainer representation problem 2013/05/14
- From: Ben Webb <ben@salilab.org>
[IMP-users] Help-symmetry operation 2013/05/23
- From: Joseph Eschweiler <joeesch@umich.edu>
Re: [IMP-users] Help-symmetry operation 2013/05/24
- From: Argyris Politis <argyris.politis@chem.ox.ac.uk>
[IMP-users] how to integrate RMF with IMP.restrainer? 2013/06/25
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] how to integrate RMF with IMP.restrainer? 2013/06/25
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] how to integrate RMF with IMP.restrainer? 2013/06/25
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] how to integrate RMF with IMP.restrainer? 2013/06/25
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] how to integrate RMF with IMP.restrainer? 2013/06/25
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] problem with compiling IMP after a commit "add adaptors for taking particles to reduce need for typemaps" 2013/06/26
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] problem with compiling IMP after a commit "add adaptors for taking particles to reduce need for typemaps" 2013/06/26
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] problem with compiling IMP after a commit "add adaptors for taking particles to reduce need for typemaps" 2013/06/26
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] problem with compiling IMP after a commit "add adaptors for taking particles to reduce need for typemaps" 2013/06/26
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] how to integrate RMF with IMP.restrainer? 2013/06/26
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] problem with compiling IMP after a commit "add adaptors for taking particles to reduce need for typemaps" 2013/06/26
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] problem with compiling IMP after a commit "add adaptors for taking particles to reduce need for typemaps" 2013/06/26
- From: Jan Kosinski <kosinski@embl.de>
[IMP-users] Is ConnectivityRestraint really deprecated? What to use instead? 2013/06/27
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] Is ConnectivityRestraint really deprecated? What to use instead? 2013/06/27
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] ConnectivityRestraint evaluation fails 2013/07/01
- From: Pia Unverdorben <unverdor@biochem.mpg.de>
Re: [IMP-users] ConnectivityRestraint evaluation fails 2013/07/01
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] ConnectivityRestraint evaluation fails 2013/07/01
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Compilation error of develop-version due to problem with shell? 2013/07/08
- From: Pia Unverdorben <unverdor@biochem.mpg.de>
Re: [IMP-users] Compilation error of develop-version due to problem with shell? 2013/07/08
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Compilation error of develop-version due to problem with shell? 2013/07/08
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Failed to build IMP 2013/07/08
- From: Dan Cohen <bojemoi@gmail.com>
Re: [IMP-users] Failed to build IMP 2013/07/08
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Failed to build IMP 2013/07/09
- From: Dan Cohen <bojemoi@gmail.com>
Re: [IMP-users] Compilation error of develop-version due to problem with shell? 2013/07/09
- From: Pia Unverdorben <unverdor@biochem.mpg.de>
Re: [IMP-users] Failed to build IMP 2013/07/09
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Atom not interpolated error when using do_global_fitting from multifit 2013/07/15
- From: Dan Cohen <bojemoi@gmail.com>
[IMP-users] Rotations and Euler angles - possibly wrong documentation/function names 2013/07/15
- From: Dan Cohen <bojemoi@gmail.com>
Re: [IMP-users] Rotations and Euler angles - possibly wrong documentation/function names 2013/07/15
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] Rotations and Euler angles - possibly wrong documentation/function names 2013/07/16
- From: Dan Cohen <bojemoi@gmail.com>
Re: [IMP-users] IMP-users Digest, Vol 30, Issue 6 2013/07/16
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] IMP-users Digest, Vol 30, Issue 6 2013/07/21
- From: Dan Cohen <bojemoi@gmail.com>
[IMP-users] e2pdb2mrc - how to get a map that is aligned to the PDB 2013/07/21
- From: Dan Cohen <bojemoi@gmail.com>
Re: [IMP-users] Atom not interpolated error when using do_global_fitting from multifit 2013/07/24
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] IMP-users Digest, Vol 30, Issue 6 2013/07/24
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] Atom not interpolated error when using do_global_fitting from multifit 2013/07/28
- From: Dan Cohen <bojemoi@gmail.com>
[IMP-users] Disabling logs in IMP 2013/08/04
- From: Dan Cohen <bojemoi@gmail.com>
Re: [IMP-users] Disabling logs in IMP 2013/08/04
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Installing IMP on Ubuntu 12.04 2013/09/10
- From: Steven Howell <schowell@gwmail.gwu.edu>
Re: [IMP-users] Installing IMP on Ubuntu 12.04 2013/09/10
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.1 release 2013/10/24
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] How to represent a protein-protein interaction network in IMP 2013/10/31
- From: Hongzhu Cui <cuihzh@gmail.com>
Re: [IMP-users] How to represent a protein-protein interaction network in IMP 2013/11/01
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] How to represent a protein-protein interaction network in IMP 2013/11/01
- From: Hongzhu Cui <cuihzh@gmail.com>
Re: [IMP-users] How to represent a protein-protein interaction network in IMP 2013/11/01
- From: Daniel Russel <drussel@gmail.com>
[IMP-users] Installing IMP on Ubuntu 2013/11/15
- From: Nan Zhao <nan.zhao@msstate.edu>
Re: [IMP-users] Installing IMP on Ubuntu 2013/11/15
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] FW: Installing IMP on Ubuntu 2013/11/15
- From: Nan Zhao <nan.zhao@msstate.edu>
Re: [IMP-users] FW: Installing IMP on Ubuntu 2013/11/15
- From: Ben Webb <ben@salilab.org>
[IMP-users] Fwd: FW: FW: Installing IMP on Ubuntu 2013/11/19
- From: Nan Zhao <nan.zhao@msstate.edu>
Re: [IMP-users] Fwd: FW: FW: Installing IMP on Ubuntu 2013/11/19
- From: Ben Webb <ben@salilab.org>
[IMP-users] changing the default installed /usr/share/IMP path (IMP-2.1.1-1.el5.centos.x86_64.rpm/IMP-devel-2.1.1-1.el5.centos.x86_64.rpm) 2013/12/03
- From: Tru Huynh <tru@pasteur.fr>
Re: [IMP-users] changing the default installed /usr/share/IMP path (IMP-2.1.1-1.el5.centos.x86_64.rpm/IMP-devel-2.1.1-1.el5.centos.x86_64.rpm) 2013/12/03
- From: Daniel Russel <drussel@gmail.com>
Re: [IMP-users] changing the default installed /usr/share/IMP path (IMP-2.1.1-1.el5.centos.x86_64.rpm/IMP-devel-2.1.1-1.el5.centos.x86_64.rpm) 2013/12/04
- From: Tru Huynh <tru@pasteur.fr>
[IMP-users] RNA / DNA in IMP? 2014/03/13
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] RNA / DNA in IMP? 2014/03/13
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
[IMP-users] remove DiameterRestraint 2014/03/14
- From: harianto tjong <htjong@usc.edu>
Re: [IMP-users] remove DiameterRestraint 2014/03/15
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
Re: [IMP-users] remove DiameterRestraint 2014/03/15
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] remove DiameterRestraint 2014/03/15
- From: harianto tjong <htjong@usc.edu>
Re: [IMP-users] remove DiameterRestraint 2014/03/16
- From: "Daniel Russel" <drussel@gmail.com>
[IMP-users] Doxygen error with last version 2014/03/31
- From: Ibai Irastorza <iiraazc@upo.es>
Re: [IMP-users] Doxygen error with last version 2014/03/31
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Doxygen error with last version 2014/04/01
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] Doxygen error with last version 2014/04/01
- From: Ben Webb <ben@salilab.org>
[IMP-users] RMF error while building 2014/04/03
- From: Ibai Irastorza <iiraazc@upo.es>
Re: [IMP-users] RMF error while building 2014/04/03
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] RMF error while building 2014/04/03
- From: Ibai Irastorza <iiraazc@upo.es>
Re: [IMP-users] RMF error while building 2014/04/07
- From: Ibai Irastorza <iiraazc@upo.es>
[IMP-users] IMP 2.2.0 release 2014/04/10
- From: Ben Webb <ben@salilab.org>
[IMP-users] (no subject) 2014/05/21
- From: Joseph Eschweiler <joeesch@umich.edu>
Re: [IMP-users] (no subject) 2014/05/21
- From: Ben Webb <ben@salilab.org>
[IMP-users] problems when using multifit 2014/06/05
- From: Fiona Bridget Naughton <fnau4464@uni.sydney.edu.au>
Re: [IMP-users] problems when using multifit 2014/06/05
- From: Ben Webb <ben@salilab.org>
[IMP-users] problem in installing IMP 2014/06/25
- From: Pooja Dnyane <dnyanepooja138@gmail.com>
Re: [IMP-users] problem in installing IMP 2014/06/25
- From: Ben Webb <ben@salilab.org>
[IMP-users] Sampling and writing to pym/rmf 2014/07/01
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf 2014/07/01
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf 2014/07/01
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Sampling and writing to pym/rmf (Barak Raveh) 2014/07/02
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf (Barak Raveh) 2014/07/02
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf 2014/07/02
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf 2014/07/02
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf 2014/07/02
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf 2014/07/02
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf 2014/07/02
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf (Barak Raveh) 2014/07/03
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf (Josh Bullock) 2014/07/03
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf (Josh Bullock) 2014/07/03
- From: Barak Raveh <barak.raveh@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf (Barak Raveh) 2014/07/03
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] Sampling and writing to pym/rmf (Barak Raveh) (Josh Bullock) 2014/07/03
- From: Josh Bullock <jma.bullock@gmail.com>
[IMP-users] getting the MCCGsampler to work 2014/07/11
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] getting the MCCGsampler to work 2014/07/11
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] getting the MCCGsampler to work 2014/07/11
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] getting the MCCGsampler to work 2014/07/14
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] getting the MCCGsampler to work (Josh Bullock) 2014/07/15
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] getting the MCCGsampler to work (Josh Bullock) 2014/07/15
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] getting the MCCGsampler to work 2014/07/15
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.2.0 building (cmake): How to add dependencies in non-standard locations? 2014/07/30
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] IMP 2.2.0 building (cmake): How to add dependencies in non-standard locations? 2014/07/30
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.2.0 building (cmake): How to add dependencies in non-standard locations? 2014/07/30
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] IMP 2.2.0 building (cmake): How to add dependencies in non-standard locations? 2014/07/31
- From: Frank Thommen <structures-it@embl-heidelberg.de>
[IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.2.0 building: Syntax (?) errors when running `make` 2014/07/31
- From: Frank Thommen <structures-it@embl-heidelberg.de>
[IMP-users] IMP 2.2.1 release 2014/08/11
- From: Ben Webb <ben@salilab.org>
[IMP-users] doxygen version problem ("too new") when building IMP 2.2.1 2014/09/03
- From: Frank Thommen <structures-it@embl-heidelberg.de>
[IMP-users] Wrong CMake warning when building IMP 2.2.1 2014/09/03
- From: Frank Thommen <structures-it@embl-heidelberg.de>
[IMP-users] Configuring IMP 2.2.1: HDF5 once found, twice not 2014/09/03
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] Wrong CMake warning when building IMP 2.2.1 2014/09/03
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Configuring IMP 2.2.1: HDF5 once found, twice not 2014/09/03
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] doxygen version problem ("too new") when building IMP 2.2.1 2014/09/03
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] doxygen version problem ("too new") when building IMP 2.2.1 2014/09/03
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] Wrong CMake warning when building IMP 2.2.1 2014/09/03
- From: Frank Thommen <structures-it@embl-heidelberg.de>
Re: [IMP-users] Configuring IMP 2.2.1: HDF5 once found, twice not 2014/09/03
- From: Frank Thommen <structures-it@embl-heidelberg.de>
[IMP-users] converting .rmf to .pdb 2014/10/13
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] converting .rmf to .pdb 2014/10/13
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.3.0 release 2014/10/24
- From: Ben Webb <ben@salilab.org>
[IMP-users] missing binaries? 2014/11/25
- From: Joel Mackay <joel.mackay@sydney.edu.au>
Re: [IMP-users] missing binaries? 2014/11/25
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] missing binaries? 2014/11/25
- From: Joel Mackay <joel.mackay@sydney.edu.au>
Re: [IMP-users] missing binaries? 2014/11/25
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.3.1 release 2014/12/01
- From: Ben Webb <ben@salilab.org>
[IMP-users] installation 2014/12/11
- From: Joel Mackay <joel.mackay@sydney.edu.au>
Re: [IMP-users] installation 2014/12/15
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] missing binaries? 2014/12/16
- From: Ben Webb <ben@salilab.org>
[IMP-users] Problems compiling IMP on mac OS X version 10.9.5 2015/01/20
- From: Marco Di Stefano <mdistefano@pcb.ub.es>
Re: [IMP-users] Problems compiling IMP on mac OS X version 10.9.5 2015/01/29
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problems compiling IMP on mac OS X version 10.9.5 2015/01/30
- From: Marco Di Stefano <marco.di.distefano.1985@gmail.com>
[IMP-users] IMP 2.4.0 release 2015/03/02
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP-CGAL4.5.2-Surface_mesh_simplification’ is not a namespace-name 2015/03/12
- From: 陈同 <chentong_biology@163.com>
Re: [IMP-users] IMP-CGAL4.5.2-Surface_mesh_simplification’ is not a namespace-name 2015/03/12
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP-CGAL4.5.2-Surface_mesh_simplification’ is not a namespace-name 2015/03/13
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP-CGAL4.5.2-Surface_mesh_simplification’ is not a namespace-name 2015/03/16
- From: Ben Webb <ben@salilab.org>
[IMP-users] how do I build working pmi rnapolii examples ? 2015/03/19
- From: Isabelle Phan <isabelle.phan@seattlebiomed.org>
Re: [IMP-users] how do I build working pmi rnapolii examples ? 2015/03/20
- From: Ben Webb <ben@salilab.org>
[IMP-users] Problems with installing IMP on Ubuntu 15.04 2015/05/23
- From: Dennis FoxLetterman <dennisfoxfoxletterman@gmail.com>
Re: [IMP-users] Problems with installing IMP on Ubuntu 15.04 2015/05/23
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problems with installing IMP on Ubuntu 15.04 2015/05/24
- From: Dennis FoxLetterman <dennisfoxfoxletterman@gmail.com>
Re: [IMP-users] Problems with installing IMP on Ubuntu 15.04 2015/06/03
- From: harianto tjong <htjong@usc.edu>
Re: [IMP-users] Problems with installing IMP on Ubuntu 15.04 2015/06/03
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.5.0 release 2015/07/01
- From: Ben Webb <ben@salilab.org>
[IMP-users] Deprecated email address 2015/07/01
- From: mdistefano@pcb.ub.es
[IMP-users] Deprecated email address 2015/07/01
- From: mdistefano@pcb.ub.es
[IMP-users] Visualizing entire scoring function (Optimization) 2015/08/19
- From: "Hughes, Katelyn Jean" <kjhughes@WPI.EDU>
[IMP-users] Deprecated email address 2015/08/19
- From: mdistefano@pcb.ub.es
[IMP-users] Deprecated email address 2015/08/19
- From: mdistefano@pcb.ub.es
Re: [IMP-users] Visualizing entire scoring function (Optimization) 2015/08/31
- From: Ben Webb <ben@salilab.org>
[IMP-users] restraint based on pre-calculated scores 2015/10/27
- From: Jan Kosinski <kosinski@embl.de>
[IMP-users] question about running PMI 2015/10/27
- From: Jason Schmidberger <jason.schmidberger@sydney.edu.au>
Re: [IMP-users] restraint based on pre-calculated scores 2015/10/28
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] restraint based on pre-calculated scores 2015/10/28
- From: Jan Kosinski <kosinski@embl.de>
[IMP-users] question about PMI included.None.xl.db file 2015/11/01
- From: Jason Schmidberger <jason.schmidberger@sydney.edu.au>
Re: [IMP-users] question about PMI included.None.xl.db file 2015/11/02
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
Re: [IMP-users] question about PMI included.None.xl.db file 2015/11/02
- From: Jason Schmidberger <jason.schmidberger@sydney.edu.au>
[IMP-users] Conjugate Gradient optimizer with rigid bodies 2015/11/10
- From: Karine VOLTZ <voltz@igbmc.fr>
Re: [IMP-users] Conjugate Gradient optimizer with rigid bodies 2015/11/10
- From: Ben Webb <ben@salilab.org>
[IMP-users] installation issue: cgal version 10.dylib missing 2015/11/13
- From: John Robinson <john.robinson@myofilament.org>
Re: [IMP-users] installation issue: cgal version 10.dylib missing 2015/11/13
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] installation issue: cgal version 10.dylib missing 2015/11/13
- From: John Robinson <john.robinson@myofilament.org>
[IMP-users] Failed to build 1e6v example with multifit 2015/11/24
- From: Mateusz Koryciński <mat.korycinski@gmail.com>
Re: [IMP-users] Failed to build 1e6v example with multifit 2015/11/30
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Failed to build 1e6v example with multifit 2015/11/30
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] Failed to build 1e6v example with multifit 2015/12/02
- From: Mateusz Koryciński <mat.korycinski@gmail.com>
[IMP-users] error during installation 2016/01/01
- From: ashutosh srivastava <ashu4487@gmail.com>
Re: [IMP-users] error during installation 2016/01/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] error during installation 2016/01/04
- From: ashutosh srivastava <ashu4487@gmail.com>
[IMP-users] em.MapDistanceTransform class 2016/01/07
- From: Karine VOLTZ <voltz@igbmc.fr>
Re: [IMP-users] em.MapDistanceTransform class 2016/01/07
- From: Ben Webb <ben@salilab.org>
[IMP-users] MP.em.EnvelopeFitRestraint class 2016/01/18
- From: Karine VOLTZ <voltz@igbmc.fr>
[IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/01
- From: "Novosielski, Ryan" <novosirj@ca.rutgers.edu>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/01
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/01
- From: "Novosielski, Ryan" <novosirj@ca.rutgers.edu>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/01
- From: "Novosielski, Ryan" <novosirj@ca.rutgers.edu>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/02
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/02
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/02
- From: "Novosielski, Ryan" <novosirj@ca.rutgers.edu>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/02
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Compiling IMP 2.5.0 on CentOS 7 2016/02/02
- From: "Novosielski, Ryan" <novosirj@ca.rutgers.edu>
Re: [IMP-users] MP.em.EnvelopeFitRestraint class 2016/02/05
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP broken after clean install 2016/03/24
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
Re: [IMP-users] IMP broken after clean install 2016/03/24
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP broken after clean install 2016/03/25
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
[IMP-users] IMP 2.6.0 release 2016/03/28
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.6.0 release 2016/03/28
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
[IMP-users] slow MC optimizer 2016/04/12
- From: Joseph Eschweiler <joeesch@umich.edu>
[IMP-users] IMP 2.6.1 release 2016/04/14
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.6.1 release 2016/04/14
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
Re: [IMP-users] IMP 2.6.1 release 2016/04/14
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] slow MC optimizer 2016/04/14
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.6.1 release 2016/04/14
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
[IMP-users] IMP 2.6.1/CentOS-7/Ninja (only) building issue 2016/05/23
- From: Tru Huynh <tru@pasteur.fr>
Re: [IMP-users] IMP 2.6.1/CentOS-7/Ninja (only) building issue 2016/05/25
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.6.1/CentOS-7/Ninja (only) building issue 2016/05/25
- From: Tru Huynh <tru@pasteur.fr>
Re: [IMP-users] IMP 2.6.1/CentOS-7/Ninja (only) building issue 2016/05/25
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.6.2 release 2016/05/25
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.6.1/CentOS-7/Ninja (only) building issue 2016/05/25
- From: Tru Huynh <tru@pasteur.fr>
[IMP-users] ChimeraWriter 2016/05/26
- From: Ibai Irastorza <iiraazc@upo.es>
Re: [IMP-users] ChimeraWriter 2016/05/26
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] ChimeraWriter 2016/05/26
- From: Ibai Irastorza <iiraazc@upo.es>
[IMP-users] SAXS 2016/05/30
- From: Georg Kempf <georg.kempf@bzh.uni-heidelberg.de>
Re: [IMP-users] ChimeraWriter 2016/06/06
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] SAXS 2016/06/06
- From: Ben Webb <ben@salilab.org>
[IMP-users] save values of RestraintsScoringFunction to RMF 2016/06/21
- From: Jan Kosinski <kosinski@embl.de>
Re: [IMP-users] save values of RestraintsScoringFunction to RMF 2016/06/24
- From: Ben Webb <ben@salilab.org>
[IMP-users] ReplicaExchange: Could not find MPI. Using Serial Replica Exchange 2016/08/30
- From: Julian <julian.san@gmail.com>
Re: [IMP-users] ReplicaExchange: Could not find MPI. Using Serial Replica Exchange 2016/08/30
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] ReplicaExchange: Could not find MPI. Using Serial Replica Exchange 2016/08/31
- From: Julian <julian.san@gmail.com>
Re: [IMP-users] ReplicaExchange: Could not find MPI. Using Serial Replica Exchange 2016/08/31
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] ReplicaExchange: Could not find MPI. Using Serial Replica Exchange 2016/09/01
- From: Julian <julian.san@gmail.com>
[IMP-users] ideal_helix as part of multiscale model 2016/09/05
- From: Julian <julian.san@gmail.com>
[IMP-users] accuracy and get_average_distance_wrt_reference_structure() 2016/09/15
- From: Julian <julian.san@gmail.com>
[IMP-users] crosslinking with multiple copies of subunits 2016/09/27
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] accuracy and get_average_distance_wrt_reference_structure() 2016/10/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] crosslinking with multiple copies of subunits 2016/10/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] accuracy and get_average_distance_wrt_reference_structure() 2016/10/13
- From: Julian <julian.san@gmail.com>
[IMP-users] IMP.pmi.restraints.em.GaussianEMRestraint vs IMP.em.EnvelopeFitRestraint 2016/10/14
- From: Julian <julian.san@gmail.com>
[IMP-users] ideal_helix density 2016/10/20
- From: Julian <julian.san@gmail.com>
[IMP-users] Upcoming joint IMP and NAMD/VMD workshop at UCSF next month 2016/11/03
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP.pmi.restraints.em.GaussianEMRestraint vs IMP.em.EnvelopeFitRestraint 2016/11/03
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] ideal_helix density 2016/11/03
- From: Ben Webb <ben@salilab.org>
[IMP-users] SAXSISDRestaint 2016/11/28
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] SAXSISDRestaint 2016/11/28
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] SAXSISDRestaint 2016/11/29
- From: "Yannick G. Spill" <yannick.spill@gmail.com>
Re: [IMP-users] SAXSISDRestaint 2016/11/30
- From: Dina Schneidman <duhovka@gmail.com>
Re: [IMP-users] SAXSISDRestaint 2016/11/30
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] SAXSISDRestaint 2016/11/30
- From: Dina Schneidman <duhovka@gmail.com>
Re: [IMP-users] SAXSISDRestaint 2016/11/30
- From: Josh Bullock <jma.bullock@gmail.com>
Re: [IMP-users] SAXSISDRestaint 2016/12/01
- From: Dina Schneidman <duhovka@gmail.com>
Re: [IMP-users] SAXSISDRestaint 2016/12/01
- From: Josh Bullock <jma.bullock@gmail.com>
[IMP-users] install from binaries on RHEL7 2017/02/21
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
Re: [IMP-users] install from binaries on RHEL7 2017/02/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] install from binaries on RHEL7 2017/02/22
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
[IMP-users] rmf trajectory 2017/03/28
- From: Julian <julian.san@gmail.com>
[IMP-users] RNA-protein crosslinking 2017/04/02
- From: Genis Valentin <genis.gese-valentin@bzh.uni-heidelberg.de>
[IMP-users] Packing group of spheres 2017/04/07
- From: Dushyant Sahoo <sahoodushyant@gmail.com>
Re: [IMP-users] rmf trajectory 2017/04/12
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] RNA-protein crosslinking 2017/04/12
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Packing group of spheres 2017/04/12
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.7.0 release 2017/04/13
- From: Ben Webb <ben@salilab.org>
[IMP-users] Geometrical Transformations and their effects in written files 2017/05/31
- From: Kai Karius <kai.karius@gmail.com>
Re: [IMP-users] Geometrical Transformations and their effects in written files 2017/06/01
- From: Ben Webb <ben@salilab.org>
[IMP-users] Sigmoidal crosslinks in IMP.pmi 2.7.0 2017/06/08
- From: Fergal Duffy <fergal.duffy@cidresearch.org>
Re: [IMP-users] Sigmoidal crosslinks in IMP.pmi 2.7.0 2017/06/12
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Sigmoidal crosslinks in IMP.pmi 2.7.0 2017/06/29
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
Re: [IMP-users] Sigmoidal crosslinks in IMP.pmi 2.7.0 2017/06/29
- From: Isabelle Phan <isabelle.phan@cidresearch.org>
Re: [IMP-users] Sigmoidal crosslinks in IMP.pmi 2.7.0 2017/06/30
- From: Fergal Duffy <fergal.duffy@cidresearch.org>
[IMP-users] HDX-MS and DEER support 2017/08/02
- From: Igor Dikiy <Igor.Dikiy@asrc.cuny.edu>
[IMP-users] IMP 2.8.0 release 2017/08/16
- From: Ben Webb <ben@salilab.org>
[IMP-users] SOAP_SCORE 2017/08/28
- From: Pablo Chacon <pablo@chaconlab.org>
Re: [IMP-users] SOAP_SCORE 2017/09/06
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] SOAP_SCORE 2017/09/07
- From: Pablo Chacon <pablo@chaconlab.org>
Re: [IMP-users] SOAP_SCORE 2017/09/07
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] SOAP_SCORE 2017/09/08
- From: Pablo Chacon <pablo@chaconlab.org>
Re: [IMP-users] SOAP_SCORE 2017/09/08
- From: Ben Webb <ben@salilab.org>
[IMP-users] rigid bodies and super rigid bodies 2017/10/23
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] rigid bodies and super rigid bodies 2017/10/23
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] rigid bodies and super rigid bodies 2017/10/23
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] rigid bodies and super rigid bodies 2017/10/26
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] rigid bodies and super rigid bodies 2017/10/26
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] rigid bodies and super rigid bodies 2017/10/26
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] rigid bodies and super rigid bodies 2017/10/26
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
[IMP-users] MPI setup 2017/11/01
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] MPI setup 2017/11/01
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] MPI setup 2017/11/02
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] MPI setup 2017/11/02
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] MPI setup 2017/11/06
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP bug - decorating floppy bodies as gaussians 2017/11/21
- From: Fergal Duffy <fergal.duffy@cidresearch.org>
[IMP-users] Floppy bodies 2017/11/23
- From: Komjati Kornel <komjati.kornel@gmail.com>
[IMP-users] run clustering.py on multiple stat files 2017/11/27
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] run clustering.py on multiple stat files 2017/11/28
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] run clustering.py on multiple stat files 2017/11/29
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] run clustering.py on multiple stat files 2017/11/30
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Floppy bodies 2017/11/30
- From: Ben Webb <ben@salilab.org>
[IMP-users] running imp with DNA sequence 2017/12/10
- From: מירב בריטברד <meravbraitbard@gmail.com>
[IMP-users] a problem with the updated IMP 2018/01/16
- From: מירב בריטברד <meravbraitbard@gmail.com>
Re: [IMP-users] a problem with the updated IMP 2018/01/16
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP: moving a gaussian decorated flexible bead 2018/01/29
- From: Fergal Duffy <fergal.duffy@cidresearch.org>
Re: [IMP-users] IMP: moving a gaussian decorated flexible bead 2018/01/30
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] running imp with DNA sequence 2018/02/05
- From: Ben Webb <ben@salilab.org>
[IMP-users] Rigid body from multiple chains 2018/02/26
- From: Komjati Kornel <komjati.kornel@gmail.com>
Re: [IMP-users] Rigid body from multiple chains 2018/02/26
- From: Ben Webb <ben@salilab.org>
[IMP-users] ExcludedVolumeSphere resolution 2018/05/22
- From: Julian <julian.san@gmail.com>
Re: [IMP-users] ExcludedVolumeSphere resolution 2018/05/22
- From: Ben Webb <ben@salilab.org>
[IMP-users] Defining Possible Interactions 2018/06/07
- From: Komjati Kornel <komjati.kornel@gmail.com>
[IMP-users] Correctly setting non-default temperatures in Brownian dynamics simulations 2018/07/02
- From: Barak Raveh <barak.raveh@gmail.com>
[IMP-users] IMP 2.9.0 release 2018/07/03
- From: Ben Webb <ben@salilab.org>
[IMP-users] Waiting for your response 2018/07/17
- From: mariam ahmed <marriam@one.lt>
[IMP-users] Monte carlo temperature in ReplicaExchange0 2018/10/16
- From: Genis Valentin <genis.gese-valentin@bzh.uni-heidelberg.de>
Re: [IMP-users] Monte carlo temperature in ReplicaExchange0 2018/10/17
- From: Ben Webb <ben@salilab.org>
[IMP-users] multifit proteomics file 2018/12/05
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] multifit proteomics file 2018/12/07
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.10.0 release 2019/01/08
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP.pmi.macros.ReplicaExchange0 2019/02/19
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] IMP.pmi.macros.ReplicaExchange0 2019/02/20
- From: Ben Webb <ben@salilab.org>
[IMP-users] GaussianEMRestraint of Rigid Bodies 2019/02/22
- From: "Lenz, Swantje" <swantje.lenz@tu-berlin.de>
[IMP-users] IMP 2.10.1 release 2019/02/26
- From: Ben Webb <ben@salilab.org>
[IMP-users] naming subunits in IMP 2019/04/07
- From: Merav Braitbard <meravbraitbard@gmail.com>
Re: [IMP-users] naming subunits in IMP 2019/04/09
- From: Ben Webb <ben@salilab.org>
[IMP-users] weights testing 2019/04/26
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] weights testing 2019/04/26
- From: Ben Webb <ben@salilab.org>
[IMP-users] Topology colors 2019/05/13
- From: Daniel Ziemianowicz <dziemian@ucalgary.ca>
Re: [IMP-users] Topology colors 2019/05/20
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.11.0 release 2019/06/25
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.11.1 release 2019/07/18
- From: Ben Webb <ben@salilab.org>
[IMP-users] changing the python version in IMP 2019/08/26
- From: Merav Braitbard <meravbraitbard@gmail.com>
[IMP-users] CrossLinkTable 2019/08/28
- From: Julian <julian.san@gmail.com>
Re: [IMP-users] changing the python version in IMP 2019/09/05
- From: Ben Webb <ben@salilab.org>
[IMP-users] BuildModel 2 BuildSystem 2019/09/25
- From: Marcell Miski <miskima55@gmail.com>
Re: [IMP-users] BuildModel 2 BuildSystem 2019/09/25
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] BuildModel 2 BuildSystem 2019/09/25
- From: Marcell Miski <miskima55@gmail.com>
Re: [IMP-users] BuildModel 2 BuildSystem 2019/09/26
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] BuildModel 2 BuildSystem 2019/09/26
- From: Marcell Miski <miskima55@gmail.com>
[IMP-users] Maximum distance restraint between spheres 2019/10/28
- From: Altair Hernández Chinchilla <altairch95@gmail.com>
Re: [IMP-users] Maximum distance restraint between spheres 2019/10/28
- From: Ben Webb <ben@salilab.org>
[IMP-users] Ambiguous restraints 2019/10/29
- From: Francesco RAIMONDI <francesco.raimondi@sns.it>
Re: [IMP-users] Ambiguous restraints 2019/10/29
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
[IMP-users] Compiling a module out of tree 2019/10/30
- From: Patrick Goetz <pgoetz@mail.utexas.edu>
Re: [IMP-users] Compiling a module out of tree 2019/10/30
- From: Ben Webb <ben@salilab.org>
[IMP-users] Compiling an IMP module out of tree 2019/10/30
- From: "Goetz, Patrick G" <pgoetz@math.utexas.edu>
Re: [IMP-users] Compiling a module out of tree 2019/11/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Ambiguous restraints 2019/11/05
- From: Francesco RAIMONDI <francesco.raimondi@sns.it>
Re: [IMP-users] Maximum distance restraint between spheres 2019/12/04
- From: Altair Hernández Chinchilla <altairch95@gmail.com>
[IMP-users] Error in Conjugate Gradient Optimization 2019/12/04
- From: Altair Hernández Chinchilla <altairch95@gmail.com>
Re: [IMP-users] Error in Conjugate Gradient Optimization 2019/12/04
- From: Ben Webb <ben@salilab.org>
[IMP-users] mmcif creation with DNA 2019/12/05
- From: "Lenz, Swantje" <swantje.lenz@tu-berlin.de>
Re: [IMP-users] mmcif creation with DNA 2019/12/05
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.12.0 release 2019/12/06
- From: Ben Webb <ben@salilab.org>
[IMP-users] EnvelopeScore and MapDistanceTransform 2019/12/28
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Error in Conjugate Gradient Optimization 2020/01/07
- From: Altair Hernández Chinchilla <altairch95@gmail.com>
Re: [IMP-users] Error in Conjugate Gradient Optimization 2020/01/07
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] EnvelopeScore and MapDistanceTransform 2020/01/07
- From: Ben Webb <ben@salilab.org>
[IMP-users] frame 1 score inf 2020/01/08
- From: Atefeh Rafiei <atefeh.rafiei@ucalgary.ca>
Re: [IMP-users] frame 1 score inf 2020/01/08
- From: Ben Webb <ben@salilab.org>
[IMP-users] localisation densities 2020/01/09
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] localisation densities 2020/01/09
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] EnvelopeScore and MapDistanceTransform 2020/01/13
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] EnvelopeScore and MapDistanceTransform 2020/01/13
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] EnvelopeScore and MapDistanceTransform 2020/01/14
- From: Jan Kosinski <jan.kosinski@embl.de>
[IMP-users] Custom Hierarchy 2020/02/06
- From: Altair Hernández Chinchilla <altairch95@gmail.com>
Re: [IMP-users] Custom Hierarchy 2020/02/06
- From: Julian <julian.san@gmail.com>
Re: [IMP-users] Custom Hierarchy 2020/02/07
- From: Altair Hernández Chinchilla <altairch95@gmail.com>
Re: [IMP-users] Custom Hierarchy 2020/02/07
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Custom Hierarchy 2020/02/10
- From: Altair Hernández Chinchilla <altairch95@gmail.com>
[IMP-users] restarting a run 2020/03/09
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] restarting a run 2020/03/09
- From: Ben Webb <ben@salilab.org>
[IMP-users] Error when sampling antibody conformations using rrt_sample 2020/04/08
- From: "Fisher H." <H.Fisher@soton.ac.uk>
Re: [IMP-users] Error when sampling antibody conformations using rrt_sample 2020/04/08
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP DiameterRestraint 2020/04/16
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] IMP DiameterRestraint 2020/04/16
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP DiameterRestraint 2020/04/16
- From: Altair Hernández <altairch95@gmail.com>
[IMP-users] IMP 2.13.0 release 2020/05/14
- From: Ben Webb <ben@salilab.org>
[IMP-users] Modeling the relation between two complexes with a common protein and linking region between 2020/05/28
- From: "Gorbea, Jose" <gorbea@pennmedicine.upenn.edu>
[IMP-users] Problem with IMP.core.TransformationSymmetry 2020/08/22
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/08/24
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/08/25
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/08/26
- From: Ben Webb <ben@salilab.org>
[IMP-users] Issue with using SAXS Restraint in IMP 2020/08/26
- From: "Sumner, Jacob" <sumnerja@ornl.gov>
Re: [IMP-users] Issue with using SAXS Restraint in IMP 2020/08/26
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/08/27
- From: Jan Kosinski <jan.kosinski@embl.de>
[IMP-users] anaconda package update 2020/09/01
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] anaconda package update 2020/09/01
- From: Andrea Graziadei <graziadei.a@gmail.com>
[IMP-users] Different initial model 2020/09/21
- From: "SoltaniKazemi, Elham" <elham_soltanikazemi1@baylor.edu>
[IMP-users] Precision for systems with fixed bodies 2020/09/25
- From: Atefeh Rafiei <atefeh.rafiei@ucalgary.ca>
Re: [IMP-users] Precision for systems with fixed bodies 2020/10/13
- From: Ben Webb <ben@salilab.org>
[IMP-users] Coarse Grain PDB structure 2020/10/19
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Coarse Grain PDB structure 2020/10/20
- From: Ben Webb <ben@salilab.org>
[IMP-users] Issue with Flexible Modeling Using PMI 2020/10/20
- From: Jake Sumner <jakesumner1@gmail.com>
[IMP-users] SAXS restraint error 2020/10/20
- From: Cameron Murray <crmurray@ualberta.ca>
Re: [IMP-users] SAXS restraint error 2020/10/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Issue with Flexible Modeling Using PMI 2020/10/21
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] SAXS restraint error 2020/10/21
- From: Cameron Murray <crmurray@ualberta.ca>
Re: [IMP-users] SAXS restraint error 2020/10/21
- From: Ben Webb <ben@salilab.org>
[IMP-users] PMI with multiple PDBs 2020/11/04
- From: Altair Hernández <altairch95@gmail.com>
[IMP-users] Suffle before sampling: fixed parts 2020/11/04
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] PMI with multiple PDBs 2020/11/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Suffle before sampling: fixed parts 2020/11/04
- From: Ben Webb <ben@salilab.org>
[IMP-users] Defining rigid bodies 2020/11/16
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Defining rigid bodies 2020/11/16
- From: Ben Webb <ben@salilab.org>
[IMP-users] imp_sampcon pyRMSD installation issue 2020/11/18
- From: "Gorbea, Jose" <gorbea@pennmedicine.upenn.edu>
Re: [IMP-users] imp_sampcon pyRMSD installation issue 2020/11/18
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] [External] Re: imp_sampcon pyRMSD installation issue 2020/11/18
- From: "Gorbea, Jose" <gorbea@pennmedicine.upenn.edu>
[IMP-users] Making restraints 2020/11/18
- From: "SoltaniKazemi, Elham" <elham_soltanikazemi1@baylor.edu>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/11/18
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/11/19
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/11/20
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/11/24
- From: Jan Kosinski <jan.kosinski@embl.de>
[IMP-users] Large spheres in output rmf3 files 2020/11/26
- From: "Gorbea, Jose" <gorbea@pennmedicine.upenn.edu>
Re: [IMP-users] Large spheres in output rmf3 files 2020/11/30
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.14.0 release 2020/12/02
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/12/04
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/12/04
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/12/05
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/12/05
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/12/05
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Problem with IMP.core.TransformationSymmetry 2020/12/07
- From: Ben Webb <ben@salilab.org>
[IMP-users] Setting coordinates from RMF 2020/12/10
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Setting coordinates from RMF 2020/12/11
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Setting coordinates from RMF 2020/12/13
- From: Altair Hernández <altairch95@gmail.com>
[IMP-users] Missing frame during imp_sampcon 2021/01/21
- From: "Gorbea, Jose" <gorbea@pennmedicine.upenn.edu>
Re: [IMP-users] Missing frame during imp_sampcon 2021/01/27
- From: Ben Webb <ben@salilab.org>
[IMP-users] PMI crosslinks and state ambiguity 2021/02/23
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] PMI crosslinks and state ambiguity 2021/02/23
- From: Riccardo Pellarin <pellarin.riccardo@gmail.com>
[IMP-users] Specification of symmetry groups file for imp_sampcon --ambiguity option 2021/02/25
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Specification of symmetry groups file for imp_sampcon --ambiguity option 2021/02/25
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Specification of symmetry groups file for imp_sampcon --ambiguity option 2021/02/25
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] Specification of symmetry groups file for imp_sampcon --ambiguity option 2021/02/25
- From: Shruthi Viswanath <shruthi.viswanath@gmail.com>
[IMP-users] RRT Sample with DNA 2021/02/27
- From: John Stiller <jstiller@brandeis.edu>
Re: [IMP-users] RRT Sample with DNA 2021/03/01
- From: Dina Schneidman <duhovka@gmail.com>
Re: [IMP-users] RRT Sample with DNA 2021/03/01
- From: John Stiller <jstiller@brandeis.edu>
[IMP-users] ReplicaExchange error 2021/03/05
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] ReplicaExchange error 2021/03/08
- From: Ben Webb <ben@salilab.org>
[IMP-users] Plotting XL restrains histograms from a symmetric complex on ChimeraX 2021/03/08
- From: "Gorbea, Jose" <gorbea@pennmedicine.upenn.edu>
Re: [IMP-users] Plotting XL restrains histograms from a symmetric complex on ChimeraX 2021/03/08
- From: Atefeh Rafiei <atefeh.rafiei@ucalgary.ca>
[IMP-users] IMP 2.15.0 release 2021/06/02
- From: Ben Webb <ben@salilab.org>
[IMP-users] Normal Mode Analysis 2021/06/08
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Normal Mode Analysis 2021/06/11
- From: Ben Webb <ben@salilab.org>
[IMP-users] extracting distance from CrossLinkingMassSpectrometryRestraint with state ambiguity 2021/07/02
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] extracting distance from CrossLinkingMassSpectrometryRestraint with state ambiguity 2021/07/15
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] extracting distance from CrossLinkingMassSpectrometryRestraint with state ambiguity 2021/07/15
- From: Andrea Graziadei <graziadei.a@gmail.com>
[IMP-users] REX score 2021/09/14
- From: Altair Hernández <altairch95@gmail.com>
[IMP-users] IMP Silencing output 2021/09/16
- From: Altair Hernández <altairch95@gmail.com>
[IMP-users] Paralellizing REX 2021/09/16
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Paralellizing REX 2021/09/20
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP Silencing output 2021/09/20
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] REX score 2021/09/20
- From: Ben Webb <ben@salilab.org>
[IMP-users] contact plots 2021/09/24
- From: Andrea Graziadei <graziadei.a@gmail.com>
Re: [IMP-users] contact plots 2021/09/27
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] contact plots 2021/09/27
- From: Ignacia Echeverria <iecheverria@gmail.com>
[IMP-users] Optimizing MCMC parameters in IMP 2021/11/22
- From: Shruthi Viswanath <shruthi.viswanath@gmail.com>
[IMP-users] IMP 2.16.0 release 2021/12/16
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.16.0 release 2021/12/20
- From: Jan Kosinski <jan.kosinski@embl.de>
Re: [IMP-users] IMP 2.16.0 release 2021/12/20
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] IMP 2.16.0 release 2021/12/20
- From: Jan Kosinski <jan.kosinski@embl.de>
[IMP-users] DNA modeling 2022/03/02
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] DNA modeling 2022/03/02
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] DNA modeling 2022/03/03
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] DNA modeling 2022/03/04
- From: Ben Webb <ben@salilab.org>
[IMP-users] Membrane Restraint 2022/03/07
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Membrane Restraint 2022/03/07
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Membrane Restraint 2022/03/08
- From: Ben Webb <ben@salilab.org>
Re: [IMP-users] Membrane Restraint 2022/03/10
- From: Altair Hernández <altairch95@gmail.com>
[IMP-users] Returning original atom coordinates after sampling 2022/03/29
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Returning original atom coordinates after sampling 2022/03/29
- From: Ben Webb <ben@salilab.org>
[IMP-users] MC temperature 2022/04/29
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] MC temperature 2022/04/29
- From: Ben Webb <ben@salilab.org>
[IMP-users] Create topology from mmCIF 2022/05/03
- From: Altair Hernández <altairch95@gmail.com>
Re: [IMP-users] Create topology from mmCIF 2022/05/03
- From: Ben Webb <ben@salilab.org>
[IMP-users] IMP 2.17.0 release 2022/06/23
- From: Ben Webb <ben@salilab.org>
[IMP-users] Precision for integrative models 2022/07/02
- From: Shruthi Viswanath <shruthi.viswanath@gmail.com>

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