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Re: [IMP-users] Failed to build 1e6v example with multifit



Hi Jan,

Thank you for your reply.

Yes, they are close in space to the map, in fact they are all packed in its center.

Best regards,
Mateusz

On Mon, Nov 30, 2015 at 8:29 PM, Jan Kosinski <" target="_blank">> wrote:
Hi Mateusz,

If you open the map and your structures in their initial positions in Chimera, are they close in space to the map? For Multifit, the initial structures must be close to the box of the map. Maybe this is the reason.

See my previous response for explanations:
https://integrativemodeling.org/archives/imp-users/msg00304.html

Best,
Jan


On 11/24/15 4:33 AM, Mateusz KoryciÅski wrote:
Was anyone able to build 1e6v example?

I was trying to model complex I am currently working on, however with no
luck. To test the software I've tried to model example 1e6v, provided
along with the source code. Multifit align step produced
asmb.combinations file with "NO SOLUTIONS FOUND".

MultiFit is rather sensitive to the set of input parameters you feed it. But Keren, the author of MultiFit, is working to remedy this and may be able to help you.

Ben
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"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle
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Pozdrawiam,
Mateusz KoryciÅski