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Re: [IMP-users] protein structure generation from sequences with IMP
- To: Help and discussion for users of IMP <>
- Subject: Re: [IMP-users] protein structure generation from sequences with IMP
- From: Ben Webb <>
- Date: Tue, 10 Apr 2012 12:44:38 -0700
- Reply-to: Help and discussion for users of IMP <>
On 04/10/2012 12:40 PM, Adhikari, Badri (MU-Student) wrote:
We are working on a project in which we need to generate protein models
from the amino acid sequences, using IMP.
If you want to build extended chain structures, see
If you have some extra knowledge (e.g. stereochemistry, atom-atom
distances) you can then add that in as restraints and sample.
If you want to build homology models, IMP doesn't do that - you can use
our MODELLER package to do that instead.
If you want to build ab initio models, you might want to try a tool like
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle