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Hello all, We installed IMP in one of our servers by building the source code files. I do not have root access on the servers.
It looks like I need to use the atom module and so after installation, I tested the installation with the files in the test directory inside the atom module’s directory.
I can run the files like test_bd.py and test_charmm_atom.py run smooth, but files like test_charmm_parameters.py throw the following error. RuntimeError: Unknown error caught by Python wrapper Details of the error message is attached. Please help! Warm Regards, Badri Adhikari CS Graduate Student, University of Missouri-Columbia, Columbia, Missouri Cell: 573 639 2847 |
[bap54@sysbio:/home/bap54/bin/imp-1.0/modules/atom/test ] $ python test_charmm_parameters.py
E
======================================================================
ERROR: Check extraction of bond parameters
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Traceback (most recent call last):
File "test_charmm_parameters.py", line 13, in test_bond_parameters
p = IMP.atom.CHARMMParameters(IMP.atom.get_data_path('top.lib'),
RuntimeError: Unknown error caught by Python wrapper
----------------------------------------------------------------------
Ran 1 test in 0.000s
FAILED (errors=1)
[bap54@sysbio:/home/bap54/bin/imp-1.0/modules/atom/test ] $ python test_charmm_topology.py
.......EEEEEEEWARNING Object "Nameless" was never used. See the IMP::Object documentation for an explanation.
.. WARNING Object "Nameless" was never used. See the IMP::Object documentation for an explanation.
.E
======================================================================
ERROR: Make sure dihedrals can have negative stiffness
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Traceback (most recent call last):
File "test_charmm_topology.py", line 276, in test_dihedral_stiffness
ff = IMP.atom.CHARMMParameters(IMP.atom.get_data_path("top.lib"),
RuntimeError: Unknown error caught by Python wrapper