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Re: [IMP-users] contact plots

On 9/24/21 8:37 AM, Andrea Graziadei wrote:

I have seen in some manuscripts (e.g. the cop9 signalosome paper by
Gutierrez et al. https://www.pnas.org/content/117/8/4088 ) the
analysis of average contact maps from clusters coming out of
imp-sampcon or similar analysis of PMI modeling runs. In that
manuscript for example it's in Fig. S7, panel G. I was wondering if
you could tell me what is the tool used for this type of analysis, and
whether it works on pdb or rmf files?
The authors of that paper (cc'd here) will know for sure, but all the scripts they used should be in the GitHub repository at https://github.com/integrativemodeling/CSN2019 

	Ben
--
                      https://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
	- Sir Arthur Conan Doyle