|
| DensityHeader (IMP::em) | InContainerPairFilter (IMP::container) | ParticleEmbedding (IMP::statistics) | SGEQsubSlaveArray (IMP.parallel) |
| DensityMap (IMP::em) | InContainerQuadFilter (IMP::container) | ParticlesAdaptor (IMP::domino) | Shift (IMP::score_functor) |
| AbstractGrid (IMP.isd.AbstractGrid) | DependencyScoreState (IMP::domino) | InContainerSingletonFilter (IMP::container) | ParticlesDummyRestraint (IMP::em2d) | Showable (IMP::base) |
| AbstractService (IMP.isd.AbstractGrid) | DerivativeAccumulator (IMP::kernel) | InContainerTripletFilter (IMP::container) | ParticleStates (IMP::domino) | SimpleAssignmentsTable (IMP::domino) |
| AddBoolFlag (IMP::base) | DerivativesFromRefined (IMP::core) | IncrementalScoringFunction (IMP::core) | ParticleStatesTable (IMP::domino) | SimpleConnectivity (IMP::restrainer) |
| AddFloatFlag (IMP::base) | DerivativesToRefined (IMP::core) | Index (IMP::base) | PartitionalClustering (IMP::statistics) | SimpleDiameter (IMP::restrainer) |
| AddIntFlag (IMP::base) | DiameterRestraint (IMP::core) | IndexException (IMP::base) | PartitionalClusteringWithCenter (IMP::statistics) | SimpleDistance (IMP::restrainer) |
| AddScores (IMP::score_functor) | Diffusion (IMP::atom) | IndexStates (IMP::domino) | PCAAligner (IMP::em) | SimpleEMFit (IMP::restrainer) |
| AddStringFlag (IMP::base) | Dihedral (IMP::atom) | IndexVector (IMP::base) | PCAFitRestraint (IMP::em) | SimpleExcludedVolume (IMP::restrainer) |
| AlignmentClustering (IMP.multifit.cluster) | DihedralRestraint (IMP::core) | InitialDockingFromXlinks (IMP.em2d.buildxlinks) | PDBSelector (IMP::atom) | Simplex (IMP::gsl) |
| AlignSymmetric (IMP::cnmultifit) | DihedralSingletonScore (IMP::atom) | InputAdaptor (IMP::base) | PeriodicOptimizerState (IMP::core) | Simulator (IMP::atom) |
| AllBipartitePairContainer (IMP::container) | DirectorObjectChecker (IMP.test) | InternalException (IMP::base) | PermutationStates (IMP::domino) | SingletonConstraint (IMP::core) |
| AllMol2Selector (IMP::atom) | DiscreteSampler (IMP::domino) | IOException (IMP::base) | piecewise_linear_distribution (IMP::base) | SingletonContainer (IMP::kernel) |
| AllPairContainer (IMP::container) | DisjointSetsSubsetFilterTable (IMP::domino) | ISDRestraint (IMP::isd) | Pipe (IMP.isd.utils) | SingletonContainerAdaptor (IMP::kernel) |
| AllPDBSelector (IMP::atom) | Display (IMP.restrainer) | IsosurfaceGeometry (IMP::display) | PivyWriter (IMP::display) | SingletonContainerSet (IMP::container) |
| AllSamePairPredicate (IMP::core) | DistanceFilterTable (IMP::em2d) |
| Plane3D (IMP::algebra) | SingletonContainerStatistics (IMP::container) |
| AllSameQuadPredicate (IMP::core) | DistanceMask (IMP::em) | PlaneGeometry (IMP::display) | SingletonGeometry (IMP::display) |
| AllSameSingletonPredicate (IMP::core) | DistancePairScore (IMP::score_functor) | JeffreysRestraint (IMP::isd) | Pointer (IMP::base) | SingletonModifier (IMP::kernel) |
| AllSameTripletPredicate (IMP::core) | DistancePairScore (IMP::core) | JPGImageReaderWriter (IMP::em2d) | PointGeometry (IMP::display) | SingletonPredicate (IMP::kernel) |
| AmbiguousNOERestraint (IMP::isd) | DistanceRestraint (IMP::core) |
| PolarResamplingParameters (IMP::em2d) | SingletonRestraint (IMP::core) |
| AmbiguousRestraint (IMP::isd) | DistributePairsScoreState (IMP::container) | PolygonGeometry (IMP::display) | SingletonsConstraint (IMP::container) |
| Analysis (IMP.isd.Analysis) | DistributeQuadsScoreState (IMP::container) | KClosePairsPairScore (IMP::core) | PPDBSelector (IMP::atom) | SingletonScore (IMP::kernel) |
| AndPDBSelector (IMP::atom) | DistributeSingletonsScoreState (IMP::container) | KernelParameters (IMP::em) | PredicatePairsRestraint (IMP::container) | SingletonsGeometry (IMP::display) |
| Angle (IMP::atom) | DistributeTripletsScoreState (IMP::container) | Key (IMP::kernel) | PredicateQuadsRestraint (IMP::container) | SingletonsOptimizerState (IMP::container) |
| AngleRestraint (IMP::core) | Distribution (IMP::saxs) | KMeans (IMP::kmeans) | PredicateSingletonScore (IMP::core) | SingletonsRestraint (IMP::container) |
| AngleSingletonScore (IMP::atom) | DockOrder (IMP.em2d.buildxlinks) |
| PredicateSingletonsRestraint (IMP::container) | SkinSurfaceGeometry (IMP::display) |
| AngleTripletScore (IMP::core) | Domain (IMP::atom) | PredicateTripletsRestraint (IMP::container) | Slave (IMP.parallel) |
| ApplicationTestCase (IMP.test) | DominoModel (IMP.em2d.DominoModel) | LabelGeometry (IMP::display) | PrincipalComponentAnalysisD (IMP::algebra) | SlaveArray (IMP.parallel) |
| Array (IMP::base) | DominoSampler (IMP::domino) | LangevinThermostatOptimizerState (IMP::atom) | ProbabilisticSubsetFilterTable (IMP::domino) | Slice (IMP::domino) |
| AssemblyHeader (IMP::multifit) | Dope (IMP::score_functor) | LeavesRefiner (IMP::core) | Profile (IMP::saxs) | SlidingPriorRestraint (IMP::isd) |
| Assignment (IMP::domino) | DopePairScore (IMP::atom) | LennardJones (IMP::atom) | Profiler (IMP::benchmark) | SmoothingFunction (IMP::atom) |
| AssignmentContainer (IMP::domino) | DummyRestraint (IMP::em2d) | LennardJonesPairScore (IMP::atom) | ProjectionFinder (IMP::em2d) | SoftCylinderPairScore (IMP::misc) |
| AssignmentsTable (IMP::domino) | DynamicListPairContainer (IMP::container) | LessPairBySecond (IMP::em2d) | ProjectionMask (IMP::em2d) | SoftSpherePairScore (IMP::core) |
| Atom (IMP::atom) | DynamicListQuadContainer (IMP::container) | Linear (IMP::core) | ProjectionParameters (IMP::em2d) | SolventAccessibleSurface (IMP::saxs) |
| ATOMPDBSelector (IMP::atom) | DynamicListSingletonContainer (IMP::container) | Linear1DFunction (IMP::isd) | ProjectionParametersScoreState (IMP::em2d) | SparseGrid3D (IMP::algebra) |
| AtomType (IMP::atom) | DynamicListTripletContainer (IMP::container) | LinearFit2D (IMP::algebra) | ProjectionStates (IMP::em2d) | SparseGridStorageD (IMP::algebra) |
| AttributeSingletonPredicate (IMP::core) | DynamicNearestNeighbor3D (IMP::algebra) | LinearLowerBound (IMP::score_functor) | ProteinLigandAtomPairScore (IMP::atom) | SparseSymmetricPairMemoizer (IMP::base) |
|
|
| ListAssignmentContainer (IMP::domino) | ProteinLigandRestraint (IMP::atom) | SparseUnboundedGrid3D (IMP::algebra) |
| ListAssignmentsTable (IMP::domino) | ProteinsAnchorsSamplingSpace (IMP::multifit) | SparseUnboundedGridD (IMP::algebra) |
| BallMover (IMP::core) | EdgePairGeometry (IMP::core) | ListPairContainer (IMP::container) | PymolWriter (IMP::display) | SphereD (IMP::algebra) |
| BerendsenThermostatOptimizerState (IMP::atom) | EdgePairsGeometry (IMP::core) | ListQuadContainer (IMP::container) | PyroHandler (IMP.isd.PyroGrid) | SphereDistance (IMP::score_functor) |
| BildWriter (IMP::display) | ElementTable (IMP::atom) | ListSingletonContainer (IMP::container) | PyroProxy (IMP.isd.PyroGrid) | SphereDistancePairScore (IMP::core) |
| BinormalTerm (IMP::modeller) | Ellipsoid3D (IMP::algebra) | ListSubsetFilterTable (IMP::domino) | PythonDirectedGraph (IMP::kernel) | SphereDistanceToSingletonScore (IMP::core) |
| BivariateFunction (IMP::isd) | EllipsoidGeometry (IMP::display) | ListTripletContainer (IMP::container) |
| SphereGeometry (IMP::display) |
| Bond (IMP::atom) | Em2DRestraint (IMP::em2d) | LoadLink (IMP::rmf) | SpherePatch3D (IMP::algebra) |
| Bonded (IMP::atom) | EM2DScore (IMP::em2d) | LocalSlave (IMP.parallel) | QuadConstraint (IMP::core) | SphericalVector3D (IMP::algebra) |
| BondedPairFilter (IMP::atom) | Embedding (IMP::statistics) | LogEmbeddingD (IMP::algebra) | QuadContainer (IMP::kernel) | SpiderHeader (IMP::em) |
| BondEndpointsRefiner (IMP::atom) | Entry (IMP.isd.Entry) | LogicalORRestraint (IMP::isd) | QuadContainerAdaptor (IMP::kernel) | SpiderImageReaderWriter (IMP::em2d) |
| BondGeometry (IMP::atom) | EnvelopeFitRestraint (IMP::em) | LognormalRestraint (IMP::isd) | QuadContainerSet (IMP::container) | SpiderMapReaderWriter (IMP::em) |
| BondGraph (IMP::atom) | EnvelopePenetrationRestraint (IMP::em) | LogPairScore (IMP::misc) | QuadContainerStatistics (IMP::container) | StateAdaptor (IMP::misc) |
| BondPairContainer (IMP::atom) | EnvelopeScore (IMP::em) | LowestRefinedPairScore (IMP::misc) | QuadModifier (IMP::kernel) | Statistical (IMP::score_functor) |
| BondsGeometry (IMP::atom) | EqualitySubsetFilterTable (IMP::domino) | LRUCache (IMP::base) | QuadPredicate (IMP::kernel) | StatisticalPairScore (IMP::core) |
| BondSingletonScore (IMP::atom) | EquivalenceAndExclusionSubsetFilterTable (IMP::domino) |
| QuadraticClosePairsFinder (IMP::core) | Statistics (IMP.isd.Statistics) |
| BoundedGridRangeD (IMP::algebra) | EquivalenceSubsetFilterTable (IMP::domino) | QuadRestraint (IMP::core) | SteepestDescent (IMP::core) |
| BoundingBoxD (IMP::algebra) | Error (IMP.parallel) | MaintainScaleOrderConstraint (IMP::isd) | QuadsConstraint (IMP::container) | StereochemistryPairFilter (IMP::atom) |
| BoundingBoxGeometry (IMP::display) | EuclideanVectorKDMetric (IMP::algebra) | Manager (IMP.parallel) | QuadScore (IMP::kernel) | Subset (IMP::domino) |
| BoxSweepClosePairsFinder (IMP::core) | EvaluationState (IMP::kernel) | map (IMP::base) | QuadsOptimizerState (IMP::container) | SubsetFilter (IMP::domino) |
| BranchAndBoundAssignmentsTable (IMP::domino) | EventException (IMP::base) | MapDistanceTransform (IMP::em) | QuadsRestraint (IMP::container) | SubsetFilterTable (IMP::domino) |
| BranchAndBoundSampler (IMP::domino) | EventPairsOptimizerState (IMP::container) | MapReaderWriter (IMP::em) | QuasiNewton (IMP::gsl) | SurfaceMeshGeometry (IMP::display) |
| BrownianDynamics (IMP::atom) | EventQuadsOptimizerState (IMP::container) | MarginalHBondRestraint (IMP::isd) |
| SurfaceShellDensityMap (IMP::em) |
|
| EventSingletonsOptimizerState (IMP::container) | MarginalNOERestraint (IMP::isd) | Switching (IMP::isd) |
| EventTripletsOptimizerState (IMP::container) | MasksManager (IMP::em2d) | RadialDistributionFunction (IMP::saxs) |
|
| CAlphaPDBSelector (IMP::atom) | ExampleComplexRestraint (IMP::example) | Mass (IMP::atom) | RadiusDependentKernelParameters (IMP::em) |
| CappedAssignmentContainer (IMP::domino) | ExampleConstraint (IMP::example) | MatchTemplateResult (IMP::em2d) | RadiusOfGyrationRestraint (IMP::multifit) | TableRefiner (IMP::core) |
| CBetaPDBSelector (IMP::atom) | ExampleDecorator (IMP::example) | MaxVectorKDMetric (IMP::algebra) | RadiusOfGyrationRestraint (IMP::saxs) | TALOSReader (IMP.isd.TALOSReader) |
| CenteredMat (IMP::em2d) | ExamplePairScore (IMP::example) | MCCGSampler (IMP::core) | RAII (IMP::base) | TALOSRestraint (IMP::isd) |
| Centroid (IMP::core) | ExampleRefCounted (IMP::example) | Memoizer (IMP::base) | RangeViewAssignmentContainer (IMP::domino) | TestCase (IMP.test) |
| CentroidOfRefined (IMP::core) | ExampleRestraint (IMP::example) | Metric (IMP::statistics) | ReadAssignmentContainer (IMP::domino) | TextInput (IMP::base) |
| Chain (IMP::atom) | ExampleSingletonModifier (IMP::example) | MinimumPairRestraint (IMP::container) | ReadHDF5AssignmentContainer (IMP::domino) | TextOutput (IMP::base) |
| ChainPDBSelector (IMP::atom) | ExampleSubsetFilterTable (IMP::example) | MinimumPairScore (IMP::container) | RecursiveAssignmentsTable (IMP::domino) | TextWriter (IMP::display) |
| Charged (IMP::atom) | ExampleTemplateClassD (IMP::example) | MinimumQuadRestraint (IMP::container) | RecursivePartitionalClusteringEmbedding (IMP::statistics) | TrackedObject (IMP::base) |
| CHARMMAtom (IMP::atom) | ExampleUnaryFunction (IMP::example) | MinimumQuadScore (IMP::container) | RecursivePartitionalClusteringMetric (IMP::statistics) | Tracker (IMP::base) |
| CHARMMAtomTopology (IMP::atom) | Exception (IMP::base) | MinimumRestraint (IMP::core) | RecursiveStates (IMP::domino) | Transform (IMP::core) |
| CHARMMBondEndpoint (IMP::atom) | ExcludedVolumeRestraint (IMP::core) | MinimumRestraintScoreSubsetFilterTable (IMP::domino) | RefCountChecker (IMP.test) | Transformation2D (IMP::algebra) |
| CHARMMBondParameters (IMP::atom) | ExclusionSubsetFilterTable (IMP::domino) | MinimumSingletonRestraint (IMP::container) | RefCounted (IMP::base) | Transformation3D (IMP::algebra) |
| CHARMMConnection (IMP::atom) | ExclusiveConsecutivePairContainer (IMP::container) | MinimumSingletonScore (IMP::container) | Reference (IMP::core) | TransformationAndReflectionSymmetry (IMP::core) |
| CHARMMDihedralParameters (IMP::atom) | ExclusiveConsecutivePairFilter (IMP::container) | MinimumTripletRestraint (IMP::container) | ReferenceFrame3D (IMP::algebra) | TransformationSymmetry (IMP::core) |
| CHARMMIdealResidueTopology (IMP::atom) | ExtendedGridIndexD (IMP::algebra) | MinimumTripletScore (IMP::container) | ReferenceFrameGeometry (IMP::display) | TransformedDistancePairScore (IMP::core) |
| CHARMMInternalCoordinate (IMP::atom) |
| Model (IMP::kernel) | RefinedPairsPairScore (IMP::core) | Triangle3D (IMP::algebra) |
| CHARMMParameters (IMP::atom) | ModelException (IMP::base) | Refiner (IMP::kernel) | TriangleGeometry (IMP::display) |
| CHARMMPatch (IMP::atom) | FIFOBasedRemoteObject (IMP.isd.FIFOBasedGrid) | ModellerRestraints (IMP.modeller) | Reflection3D (IMP::algebra) | TripletConstraint (IMP::core) |
| CHARMMResidueTopology (IMP::atom) | FileBasedRemoteObject (IMP.isd.FileBasedGrid) | ModelLoader (IMP.modeller) | RegistrationResult (IMP::em2d) | TripletContainer (IMP::kernel) |
| CHARMMResidueTopologyBase (IMP::atom) | FilterGeometry (IMP::display) | ModelObject (IMP::kernel) | RemoteError (IMP.parallel) | TripletContainerAdaptor (IMP::kernel) |
| CHARMMSegmentTopology (IMP::atom) | Fine2DRegistrationRestraint (IMP::em2d) | ModifierVisitor (IMP::core) | RemoveRigidMotionOptimizerState (IMP::atom) | TripletContainerSet (IMP::container) |
| CHARMMStereochemistryRestraint (IMP::atom) | FitRestraint (IMP::em) | Mol2Selector (IMP::atom) | RemoveTranslationOptimizerState (IMP::atom) | TripletContainerStatistics (IMP::container) |
| CHARMMTopology (IMP::atom) | FittingSolutionRecord (IMP::multifit) | MolecularDynamics (IMP::atom) | Representation (IMP.restrainer) | TripletModifier (IMP::kernel) |
| ChecksScoreState (IMP::core) | FittingSolutions (IMP::em) | MolecularDynamics (IMP::isd) | RepulsiveDistancePairScore (IMP::isd) | TripletPredicate (IMP::kernel) |
| ChildrenRefiner (IMP::core) | FittingStates (IMP::multifit) | MolecularDynamicsMover (IMP::isd) | Residue (IMP::atom) | TripletRestraint (IMP::core) |
| ChimeraWriter (IMP::display) | FixedRefiner (IMP::core) | Molecule (IMP::atom) | ResidueRotamer (IMP::rotamer) | TripletsConstraint (IMP::container) |
| ChiSquaredScore (IMP::em2d) | FixedXYZ (IMP::algebra) | MonteCarlo (IMP::core) | ResidueType (IMP::atom) | TripletScore (IMP::kernel) |
| CloseBipartitePairContainer (IMP::container) | FixedZXZ (IMP::algebra) | MonteCarloMover (IMP::core) | Restraint (IMP::saxs) | TripletsOptimizerState (IMP::container) |
| ClosedCubicSpline (IMP::core) | FixedZYZ (IMP::algebra) | MonteCarloMoverResult (IMP::core) | Restraint (IMP.restrainer) | TripletsRestraint (IMP::container) |
| ClosePairContainer (IMP::container) | FloatIndex (IMP::kernel) | MonteCarloRelativeMoves (IMP.em2d.MonteCarloRelativeMoves) | Restraint (IMP::kernel) | TruncatedHarmonic (IMP::core) |
| ClosePairsFinder (IMP::core) | FNormal (IMP::isd) | MonteCarloWithBasinHopping (IMP::core) | RestraintCache (IMP::domino) | Typed (IMP::core) |
| ClosePairsPairScore (IMP::core) | ForceFieldParameters (IMP::atom) | MonteCarloWithLocalOptimization (IMP::core) | RestraintGeometry (IMP::display) | TypedPairScore (IMP::core) |
| ClusterRecord (IMP.em2d.solutions_io) | ForceSwitch (IMP::atom) | Mover (IMP::core) | RestraintScoreSubsetFilterTable (IMP::domino) |
|
| CMMWriter (IMP::display) | FormFactorTable (IMP::saxs) | MoverBase (IMP::core) | RestraintSet (IMP::kernel) |
| CoarseCC (IMP::em) | Fragment (IMP::atom) | MoveStatisticsScoreState (IMP::core) | RestraintSetGeometry (IMP::display) | UnaryFunction (IMP::kernel) |
| CoarseCCatIntervals (IMP::em) |
| MRCReaderWriter (IMP::em) | RestraintsScoringFunction (IMP::core) | UnaryFunctionEvaluate (IMP::score_functor) |
| CoarseConvolution (IMP::em) | MSConnectivityRestraint (IMP::core) | RestraintStatistics (IMP::kernel) | UnboundedGridRangeD (IMP::algebra) |
| CoinFlipPairPredicate (IMP::core) | GaussianProcessInterpolation (IMP::isd) | MultipleBinormalRestraint (IMP::modeller) | Result (IMP.isd.AbstractGrid) | UncheckedWeakPointer (IMP::base) |
| CoinFlipQuadPredicate (IMP::core) | GaussianProcessInterpolationRestraint (IMP::isd) | MultivariateFNormalSufficient (IMP::isd) | ResultsDB (IMP.em2d.solutions_io) | Undecorator (IMP::kernel) |
| CoinFlipSingletonPredicate (IMP::core) | GaussianRestraint (IMP::isd) | MyMetric (write_a_metric) | RigidBody (IMP::core) | UnivariateFunction (IMP::isd) |
| CoinFlipTripletPredicate (IMP::core) | GeneralizedGuinierPorodFunction (IMP::isd) |
| RigidBodyDerivativeGeometry (IMP::core) | UnorderedTypePairPredicate (IMP::core) |
| Color (IMP::display) | GenericAttributeSingletonScore (IMP::core) | RigidBodyDerivativesGeometry (IMP::core) | UnorderedTypeQuadPredicate (IMP::core) |
| Colored (IMP::display) | GenericBoundingBox3DSingletonScore (IMP::core) | NearestNeighborD (IMP::algebra) | RigidBodyDiffusion (IMP::atom) | UnorderedTypeSingletonPredicate (IMP::core) |
| CommandDispatcher (IMP.kernel) | GenericDistanceToSingletonScore (IMP::core) | NearestNeighborsClosePairsFinder (IMP::core) | RigidBodyDistancePairScore (IMP::core) | UnorderedTypeTripletPredicate (IMP::core) |
| CommonEndpointPairFilter (IMP::misc) | GenericScopedRemoveRestraint (IMP::kernel) | NestedRigidBodyStates (IMP::domino) | RigidBodyFrameGeometry (IMP::core) | UsageException (IMP::base) |
| ComplementarityRestraint (IMP::multifit) | GenericScopedRemoveScoreState (IMP::kernel) | NetworkError (IMP.parallel) | RigidBodyFramesGeometry (IMP::core) |
|
| ComponentHeader (IMP::multifit) | GenericScopedRestraint (IMP::kernel) | NOERestraint (IMP::isd) | RigidBodyHierarchyGeometry (IMP::core) |
| CompoundStates (IMP::domino) | GenericScopedScoreState (IMP::kernel) | NoMoreSlavesError (IMP.parallel) | RigidBodyMover (IMP::core) | Value (IMP::base) |
| Cone3D (IMP::algebra) | GeometricPrimitiveD (IMP::algebra) | NonAlternativePDBSelector (IMP::atom) | RigidBodyStates (IMP::domino) | ValueException (IMP::base) |
| Configuration (IMP::kernel) | Geometry (IMP::display) | NonCopyable (IMP::base) | RigidBodyTorque (IMP::core) | Vector (IMP::base) |
| ConfigurationSet (IMP::kernel) | GeometryProcessor (IMP::display) | NonHydrogenMol2Selector (IMP::atom) | RigidClosePairsFinder (IMP::core) | VectorD (IMP::algebra) |
| ConfigurationSetRMSDMetric (IMP::statistics) | GeometrySet (IMP::display) | NonRigidMember (IMP::core) | RigidMember (IMP::core) | VectorDEmbedding (IMP::statistics) |
| ConfigurationSetXYZEmbedding (IMP::statistics) | GridClosePairsFinder (IMP::core) | NonWaterNonHydrogenPDBSelector (IMP::atom) | RMSDCalculator (IMP::atom) | VectorInputD (IMP::algebra) |
| ConjugateGradients (IMP::core) | GridD (IMP::algebra) | NonWaterPDBSelector (IMP::atom) | RMSDClustering (IMP::multifit) | VectorInputD< 1 > (IMP::algebra) |
| ConjugateGradients (IMP::gsl) | GridIndexD (IMP::algebra) | NormalizedSphereDistancePairScore (IMP::core) | RotamerAngleTuple (IMP::rotamer) | VectorKDMetric (IMP::algebra) |
| ConnectingPairContainer (IMP::container) | GridStates (IMP::em2d) | NormalMover (IMP::core) | RotamerCalculator (IMP::rotamer) | VelocityScalingOptimizerState (IMP::atom) |
| ConnectivityRestraint (IMP::core) | GSLOptimizer (IMP::gsl) | NotPDBSelector (IMP::atom) | RotamerLibrary (IMP::rotamer) | VersionInfo (IMP::base) |
| ConsecutivePairContainer (IMP::container) |
| NPDBSelector (IMP::atom) | Rotation2D (IMP::algebra) | VolumeRestraint (IMP::core) |
| ConsecutivePairFilter (IMP::container) | Nuisance (IMP::isd) | Rotation3D (IMP::algebra) | vonMises (IMP::isd) |
| ConstantPairPredicate (IMP::core) | Harmonic (IMP::score_functor) |
| RunInTempDir (IMP.test) | vonMisesKappaConjugateRestraint (IMP::isd) |
| ConstantQuadPredicate (IMP::core) | Harmonic (IMP::core) |
| vonMisesKappaJeffreysRestraint (IMP::isd) |
| ConstantRestraint (IMP::core) | HarmonicDistancePairScore (IMP::core) | Object (IMP::base) | vonMisesSufficient (IMP::isd) |
| ConstantSingletonPredicate (IMP::core) | HarmonicLowerBound (IMP::score_functor) | OpenCubicSpline (IMP::core) | SameResiduePairFilter (IMP::atom) | Voxel (IMP::em) |
| ConstantTripletPredicate (IMP::core) | HarmonicLowerBound (IMP::core) | OpenCubicSpline (IMP::score_functor) | SampleAssignmentContainer (IMP::domino) |
|
| Constraint (IMP::kernel) | HarmonicSphereDistancePairScore (IMP::core) | Optimizer (IMP::kernel) | SampledDensityMap (IMP::em) |
| ConstVector (IMP::base) | HarmonicUpperBound (IMP::score_functor) | OptimizerState (IMP::kernel) | Sampler (IMP::kernel) | WarningContext (IMP::base) |
| Container (IMP::kernel) | HarmonicUpperBound (IMP::core) | OptionParser (IMP.kernel) | SaveLink (IMP::rmf) | WaterPDBSelector (IMP::atom) |
| Context (IMP.parallel) | HarmonicUpperBoundSphereDiameterPairScore (IMP::core) | Order (IMP::domino) | SaveOptimizerState (IMP::rmf) | WeakPointer (IMP::base) |
| Copy (IMP::atom) | HarmonicUpperBoundSphereDistancePairScore (IMP::core) | OrderedTypePairPredicate (IMP::core) | Scale (IMP::isd) | WeightedExcludedVolumeRestraint (IMP::multifit) |
| Cosine (IMP::core) | HarmonicWell (IMP::core) | OrderedTypeQuadPredicate (IMP::core) | ScopedAddCacheAttribute (IMP::kernel) | WeightedSphereDistancePairScore (IMP::core) |
| CoulombPairScore (IMP::atom) | HasHigherCCC (IMP::em2d) | OrderedTypeSingletonPredicate (IMP::core) | ScopedSetAttribute (IMP::kernel) | WeightScore (IMP::score_functor) |
| Covariance1DFunction (IMP::isd) | HasLowerScore (IMP::em2d) | OrderedTypeTripletPredicate (IMP::core) | Score (IMP::score_functor) | WormLikeChain (IMP::misc) |
| Cover (IMP::core) | HeapAssignmentContainer (IMP::domino) | OrPDBSelector (IMP::atom) | ScoreAccumulator (IMP::kernel) | WriteAssignmentContainer (IMP::domino) |
| CoverBond (IMP::atom) | HeapRecord (IMP.em2d.solutions_io) | OwnerPointer (IMP::base) | ScoreFunction (IMP::em2d) | WriteHDF5AssignmentContainer (IMP::domino) |
| CoverRefined (IMP::core) | HierarchiesGeometry (IMP::atom) |
| ScoreState (IMP::kernel) | WriteOptimizerState (IMP::display) |
| CPDBSelector (IMP::atom) | Hierarchy (IMP::atom) | ScoreUnaryFunction (IMP::score_functor) | WritePDBOptimizerState (IMP::atom) |
| CreateLogContext (IMP::base) | Hierarchy (IMP::core) | PackedAssignmentContainer (IMP::domino) | ScoringFunction (IMP::kernel) | Writer (IMP::display) |
| CustomXYZR (IMP::misc) | HierarchyCounter (IMP::core) | PairConstraint (IMP::core) | ScoringFunctionAdaptor (IMP::kernel) | WriterAdaptor (IMP::display) |
| CvEstimator (IMP.isd.TuneRex) | HierarchyGeometry (IMP::atom) | PairContainer (IMP::kernel) | SecondaryStructureResidue (IMP::atom) | WriteRestraintScoresOptimizerState (IMP::core) |
| Cylinder3D (IMP::algebra) | HierarchyTraits (IMP::core) | PairContainerAdaptor (IMP::kernel) | Segment3D (IMP::algebra) |
|
| CylinderGeometry (IMP::display) | HierarchyVisitor (IMP::core) | PairContainerSet (IMP::container) | SegmentationParameters (IMP::em2d) |
|
| HighDensityEmbedding (IMP::em) | PairContainerStatistics (IMP::container) | SegmentGeometry (IMP::display) | Xlink (IMP.em2d.buildxlinks) |
| Histogram (IMP::statistics) | PairGeometry (IMP::display) | Selection (IMP::atom) | XlinksDict (IMP.em2d.buildxlinks) |
| Database2 (IMP.em2d.Database) | HistogramD (IMP::statistics) | PairListSubsetFilterTable (IMP::domino) | SelectionGeometry (IMP::atom) | XMLDisplay (IMP.restrainer) |
| DataObject (IMP::core) | History (IMP.isd.History) | PairModifier (IMP::kernel) | SerialMover (IMP::core) | XMLRepresentation (IMP.restrainer) |
| DataPointsAssignment (IMP::multifit) | HybridMonteCarlo (IMP::isd) | PairPredicate (IMP::kernel) | Server (IMP.isd.AbstractGrid) | XMLRestraint (IMP.restrainer) |
| DecayPairContainerOptimizerState (IMP::misc) | HydrogenPDBSelector (IMP::atom) | PairRestraint (IMP::core) | set (IMP::base) | XYZ (IMP::core) |
| Decorator (IMP::kernel) |
| PairsConstraint (IMP::container) | SetCheckState (IMP::base) | XYZDerivativeGeometry (IMP::core) |
| DefaultEmbeddingD (IMP::algebra) | PairScore (IMP::kernel) | SetLogState (IMP::base) | XYZDerivativesGeometry (IMP::core) |
| DeltaDistributionFunction (IMP::saxs) | Image (IMP::em2d) | PairsGeometry (IMP::display) | SetLogTarget (IMP::base) | XYZR (IMP::core) |
| DenseGrid3D (IMP::algebra) | ImageHeader (IMP::em) | PairsOptimizerState (IMP::container) | SetNumberOfThreads (IMP::base) | XYZRGeometry (IMP::core) |
| DenseGridStorageD (IMP::algebra) | IMPRestraints (IMP.modeller) | PairsRestraint (IMP::container) | SettingsData (IMP::multifit) | XYZRsGeometry (IMP::core) |
| DensityDataPoints (IMP::multifit) | ImproperSingletonScore (IMP::atom) | ParabolicFit2D (IMP::algebra) | sfo_common (IMP.isd.shared_functions) | XYZStates (IMP::domino) |
| DensityFillingRestraint (IMP::em) | InBoundingBox3DSingletonPredicate (IMP::core) | Particle (IMP::kernel) | SGEPESlaveArray (IMP.parallel) | |
| | | | |
