IMP
2.0.1
The Integrative Modeling Platform
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#include <IMP/algebra/standard_grids.h>
Public Types | |
typedef GridD < 3, SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | P |
Public Types inherited from IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
typedef DefaultEmbeddingD< 3 > | Embedding |
typedef VectorD< D > | Vector |
Public Types inherited from IMP::algebra::SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > > | |
typedef VT | Value |
typedef Data::const_iterator | AllConstIterator |
Public Types inherited from IMP::algebra::BoundedGridRangeD< 3 > | |
typedef ExtendedGridIndexD< D > | ExtendedIndex |
typedef GridIndexD< D > | Index |
Public Member Functions | |
SparseGrid3D (double side, const BoundingBoxD< 3 > &bb, VT def=VT()) | |
SparseGrid3D (int xd, int yd, int zd, const BoundingBoxD< 3 > &bb, VT def=VT()) | |
Public Member Functions inherited from IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GridD (const Ints counts, const BoundingBoxD< D > &bb, VTdefault_value=VT()) | |
GridD (double side, const BoundingBoxD< D > &bb, const VT &default_value=VT()) | |
GridD (const SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > > &storage, const Embedding &embed) | |
GridD (double side, const VectorD< D > &origin, const VT &default_value=VT()) | |
GridD () | |
An empty, undefined grid. | |
GridIndexD< D > | add_voxel (const VectorD< D > &pt, const VT &vt) |
BoundingBoxD< D > | get_bounding_box () const |
ExtendedGridIndexD< D > | get_extended_index (const GridIndexD< D > &index) const |
Convert an index back to an extended index. | |
VT & | operator[] (VectorD< D >) |
const VT | operator[] (VectorD< D >) const |
void | set_bounding_box (const BoundingBoxD< D > &bb3) |
Change the bounding box but not the grid or contents. More... | |
GridIndexD< D > | get_nearest_index (const VectorD< D > &pt) const |
ExtendedGridIndexD< D > | get_nearest_extended_index (const VectorD< D > &pt) const |
VoxelIterator | voxels_begin (const BoundingBoxD< D > &bb) |
VoxelConstIterator | voxels_begin (const BoundingBoxD< D > &bb) const |
VoxelIterator | voxels_end (const BoundingBoxD< D > &bb) |
VoxelConstIterator | voxels_end (const BoundingBoxD< D > &bb) const |
SparseGridStorageD< 3, VT, BoundedGridRangeD < 3 > >::IndexIterator | indexes_begin (const BoundingBoxD< D > &bb) const |
SparseGridStorageD< 3, VT, BoundedGridRangeD < 3 > >::IndexIterator | indexes_end (const BoundingBoxD< D > &) const |
Functor | apply (const Functor &f) const |
Public Member Functions inherited from IMP::algebra::SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > > | |
SparseGridStorageD (const Ints &counts, const VT &default_value) | |
GridIndexD< D > | add_voxel (const ExtendedGridIndexD< D > &i, const VT &gi) |
Add a voxel to the storage, this voxel will now have a GridIndex3D. | |
Functor | apply (const Grid &g, Functor f) const |
bool | get_has_index (const ExtendedGridIndexD< D > &i) const |
Return true if the voxel has been added. | |
GridIndexD< D > | get_index (const ExtendedGridIndexD< D > &i) const |
requires get_has_index(i) is true. | |
ExtendedGridIndexD< D > | get_maximum_extended_index () const |
Return the index that has no higher index in each coordinate. | |
ExtendedGridIndexD< D > | get_minimum_extended_index () const |
Return the index which has no lower index in each coordinate. | |
unsigned int | get_number_of_voxels () const |
void | remove_voxel (const GridIndexD< D > &gi) |
void | show (std::ostream &out=std::cout) const |
AllConstIterator | all_begin () const |
AllConstIterator | all_end () const |
base::Vector< GridIndexD< D > > | get_all_indexes () const |
const VT | operator[] (GridIndexD< D >) const |
VT & | operator[] (GridIndexD< D >) |
IndexIterator | indexes_begin (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
IndexIterator | indexes_end (const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const |
base::Vector< GridIndexD< D > > | get_indexes (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
Public Member Functions inherited from IMP::algebra::BoundedGridRangeD< 3 > | |
BoundedGridRangeD (const Ints &counts) | |
ExtendedGridIndexD< D > | get_end_index () const |
Get the past-end voxel. | |
bool | get_has_index (const ExtendedGridIndexD< D > &v) const |
Return true if the ExtendedIndex is also a normal index value. | |
GridIndexD< D > | get_index (const ExtendedGridIndexD< D > &v) const |
Convert a ExtendedIndex into a real Index if possible. More... | |
ExtendedGridIndexD< D > | get_maximum_extended_index () const |
Return the index of the maximumal cell. | |
ExtendedGridIndexD< D > | get_minimum_extended_index () const |
Return the ExtendedGridIndexD of all zeros. | |
unsigned int | get_number_of_voxels (unsigned int i) const |
Return the number of voxels in a certain direction. | |
unsigned int | get_number_of_voxels () const |
void | show (std::ostream &out=std::cout) const |
AllIndexIterator | all_indexes_begin () const |
AllIndexIterator | all_indexes_end () const |
base::Vector< GridIndexD< D > > | get_all_indexes () const |
IndexIterator | indexes_begin (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
IndexIterator | indexes_end (const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const |
ExtendedIndexIterator | extended_indexes_begin (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
ExtendedIndexIterator | extended_indexes_end (const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const |
base::Vector< GridIndexD< D > > | get_indexes (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
base::Vector < ExtendedGridIndexD< D > > | get_extended_indexes (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
Public Member Functions inherited from IMP::algebra::DefaultEmbeddingD< 3 > | |
DefaultEmbeddingD (const VectorD< D > &origin, const VectorD< D > &cell) | |
unsigned int | get_dimension () const |
ExtendedGridIndexD< D > | get_extended_index (const VectorD< D > &o) const |
Return the index that would contain the voxel if the grid extended there. More... | |
GridIndexD< D > | get_index (const VectorD< D > &o) const |
const VectorD< D > | get_origin () const |
const VectorD< D > & | get_unit_cell () const |
Return the unit cell, relative to the origin. More... | |
void | set_origin (const VectorD< D > &o) |
void | set_unit_cell (const VectorD< D > &o) |
void | show (std::ostream &out=std::cout) const |
VectorD< D > | get_center (const ExtendedGridIndexD< D > &ei) const |
VectorD< D > | get_center (const GridIndexD< D > &ei) const |
BoundingBoxD< D > | get_bounding_box (const ExtendedGridIndexD< D > &ei) const |
BoundingBoxD< D > | get_bounding_box (const GridIndexD< D > &ei) const |
A sparse grid of values. In python SparseIntGrid3D is provided.
Definition at line 63 of file standard_grids.h.