IMP
2.0.1
The Integrative Modeling Platform
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Store a list of ParticlePairsTemp. More...
#include <IMP/container/DynamicListPairContainer.h>
Public Member Functions | |
DynamicListPairContainer (Container *m, std::string name="ListPairContainer %1%") | |
Public Member Functions inherited from IMP::kernel::PairContainer | |
void | apply (const PairModifier *sm) const |
Apply a SingletonModifier to the contents. | |
void | apply_generic (const PairModifier *m) const |
Just use apply() in the base class. | |
bool | get_contains_particle_pair (ParticlePair v) const |
This function is very slow and you should think hard about using it. More... | |
virtual ParticleIndexPairs | get_indexes () const =0 |
unsigned int | get_number_of_particle_pairs () const |
ParticlePair | get_particle_pair (unsigned int i) const |
ParticlePairsTemp | get_particle_pairs () const |
virtual ParticleIndexPairs | get_range_indexes () const =0 |
Public Member Functions inherited from IMP::kernel::Container | |
virtual void | do_after_evaluate (DerivativeAccumulator *accpt) |
Reset changed status. | |
ModelObjectsTemp | do_get_outputs () const |
containers don't have outputs | |
virtual ParticleIndexes | get_all_possible_indexes () const =0 |
Get contained particles. More... | |
ParticlesTemp | get_all_possible_particles () const |
bool | get_is_changed () const |
virtual bool | get_is_decomposable () const |
Public Member Functions inherited from IMP::kernel::ScoreState | |
ScoreState (Model *m, std::string name="ScoreState %1%") | |
void | after_evaluate (DerivativeAccumulator *accpt) |
Do post evaluation work if needed. | |
void | before_evaluate () |
Force update of the structure. | |
ContainersTemp | get_input_containers () const |
ParticlesTemp | get_input_particles () const |
ContainersTemp | get_output_containers () const |
ParticlesTemp | get_output_particles () const |
Public Member Functions inherited from IMP::kernel::ModelObject | |
ModelObject (Model *m, std::string name) | |
ModelObjectsTemp | get_inputs () const |
ModelObjectsTemps | get_interactions () const |
Model * | get_model () const |
ModelObjectsTemp | get_outputs () const |
Public Member Functions inherited from IMP::base::Object | |
virtual void | clear_caches () |
virtual IMP::base::VersionInfo | get_version_info () const =0 |
Get information about the module and version of the object. | |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Methods to control the contained objects | |
This container stores a list of Pair objects. To manipulate the list use these methods. | |
void | add_particle_pair (const ParticlePair &vt) |
void | add_particle_pairs (const ParticlePairsTemp &c) |
void | set_particle_pairs (ParticlePairsTemp c) |
void | clear_particle_pairs () |
Additional Inherited Members | |
Public Types inherited from IMP::kernel::PairContainer | |
typedef ParticleIndexPair | ContainedIndexType |
typedef ParticleIndexPairs | ContainedIndexTypes |
typedef ParticlePair | ContainedType |
typedef ParticlePairsTemp | ContainedTypes |
Protected Member Functions inherited from IMP::kernel::PairContainer | |
PairContainer (Model *m, std::string name="PairContainer %1%") | |
virtual void | do_apply (const PairModifier *sm) const =0 |
virtual bool | do_get_provides_access () const |
Related Functions inherited from IMP::kernel::PairContainer | |
typedef IMP::base::Vector < IMP::base::WeakPointer < PairContainer > > | PairContainersTemp |
In contrast to ListPairContainer, this list is designed to act as the output of a ScoreState or another container. The key difference is that it uses the passed Container to define the list of all possible contents of the container.
Definition at line 26 of file DynamicListPairContainer.h.