IMP
2.0.1
The Integrative Modeling Platform
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Return all close ordered pairs of particles taken from the two SingletonContainers. More...
#include <IMP/container/CloseBipartitePairContainer.h>
Public Member Functions | |
CloseBipartitePairContainer (SingletonContainerAdaptor a, SingletonContainerAdaptor b, double distance, double slack=1) | |
Get the individual particles from the passed SingletonContainer. | |
IMP_PAIR_CONTAINER (CloseBipartitePairContainer) | |
Public Member Functions inherited from IMP::kernel::PairContainer | |
void | apply (const PairModifier *sm) const |
Apply a SingletonModifier to the contents. | |
void | apply_generic (const PairModifier *m) const |
Just use apply() in the base class. | |
bool | get_contains_particle_pair (ParticlePair v) const |
This function is very slow and you should think hard about using it. More... | |
virtual ParticleIndexPairs | get_indexes () const =0 |
unsigned int | get_number_of_particle_pairs () const |
ParticlePair | get_particle_pair (unsigned int i) const |
ParticlePairsTemp | get_particle_pairs () const |
virtual ParticleIndexPairs | get_range_indexes () const =0 |
Public Member Functions inherited from IMP::kernel::Container | |
virtual void | do_after_evaluate (DerivativeAccumulator *accpt) |
Reset changed status. | |
ModelObjectsTemp | do_get_outputs () const |
containers don't have outputs | |
virtual ParticleIndexes | get_all_possible_indexes () const =0 |
Get contained particles. More... | |
ParticlesTemp | get_all_possible_particles () const |
bool | get_is_changed () const |
virtual bool | get_is_decomposable () const |
Public Member Functions inherited from IMP::kernel::ScoreState | |
ScoreState (Model *m, std::string name="ScoreState %1%") | |
void | after_evaluate (DerivativeAccumulator *accpt) |
Do post evaluation work if needed. | |
void | before_evaluate () |
Force update of the structure. | |
ContainersTemp | get_input_containers () const |
ParticlesTemp | get_input_particles () const |
ContainersTemp | get_output_containers () const |
ParticlesTemp | get_output_particles () const |
Public Member Functions inherited from IMP::kernel::ModelObject | |
ModelObject (Model *m, std::string name) | |
ModelObjectsTemp | get_inputs () const |
ModelObjectsTemps | get_interactions () const |
Model * | get_model () const |
ModelObjectsTemp | get_outputs () const |
Public Member Functions inherited from IMP::base::Object | |
virtual void | clear_caches () |
virtual IMP::base::VersionInfo | get_version_info () const =0 |
Get information about the module and version of the object. | |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Methods to control the set of filters | |
PairPredicate objects can be used as filters to prevent the addition of pairs to the containeroutput list. Pairs for which the predicates evaluate to a non-zero value are excluded from the list. | |
void | remove_pair_filter (PairPredicate *d) |
void | remove_pair_filters (const PairPredicates &d) |
void | set_pair_filters (const PairPredicates &ps) |
void | set_pair_filters_order (const PairPredicates &objs) |
unsigned int | add_pair_filter (PairPredicate *obj) |
void | add_pair_filters (const PairPredicates &objs) |
void | clear_pair_filters () |
unsigned int | get_number_of_pair_filters () const |
bool | get_has_pair_filters () |
PairPredicate * | get_pair_filter (unsigned int i) const |
PairPredicates | get_pair_filters () const |
void | reserve_pair_filters (unsigned int sz) |
Additional Inherited Members | |
Public Types inherited from IMP::kernel::PairContainer | |
typedef ParticleIndexPair | ContainedIndexType |
typedef ParticleIndexPairs | ContainedIndexTypes |
typedef ParticlePair | ContainedType |
typedef ParticlePairsTemp | ContainedTypes |
Protected Member Functions inherited from IMP::kernel::PairContainer | |
PairContainer (Model *m, std::string name="PairContainer %1%") | |
virtual void | do_apply (const PairModifier *sm) const =0 |
virtual bool | do_get_provides_access () const |
Related Functions inherited from IMP::kernel::PairContainer | |
typedef IMP::base::Vector < IMP::base::WeakPointer < PairContainer > > | PairContainersTemp |
See ClosePairContainer for a more detailed description. This container lists all close pairs of particles where one particle is taken from each of the input sets.
Definition at line 34 of file CloseBipartitePairContainer.h.