A well with harmonic barriers. More...

#include <IMP/core/HarmonicWell.h>

Inheritance diagram for IMP::core::HarmonicWell:

Public Member Functions
	HarmonicWell (const FloatRange &well, double k)
	Initialize with the lower and upper bounds and the spring constant.

virtual double	evaluate (double feature) const
	Calculate score with respect to the given feature. More...

virtual DerivativePair	evaluate_with_derivative (double feature) const
	Calculate score and derivative with respect to the given feature. More...

Public Member Functions inherited from IMP::kernel::UnaryFunction
	UnaryFunction (std::string name="UnaryFunction%1%")

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

virtual IMP::base::VersionInfo	get_version_info () const =0
	Get information about the module and version of the object.

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Related Functions
(Note that these are not member functions.)
typedef IMP::base::Vector < IMP::base::WeakPointer < HarmonicWell > >	HarmonicWellsTemp

Related Functions inherited from IMP::kernel::UnaryFunction
typedef IMP::base::Vector < IMP::base::WeakPointer < UnaryFunction > >	UnaryFunctionsTemp

Related Functions inherited from IMP::base::Object
typedef IMP::base::Vector < IMP::base::WeakPointer < Object > >	ObjectsTemp

Additional Inherited Members
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

Detailed Description

The well is defined by a center, a width and a k. The score is 0 if the feature is within the width/2.0. Outside of the width the score is a harmonic.