IMP
2.0.1
The Integrative Modeling Platform
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#include <IMP/em2d/SpiderImageReaderWriter.h>
Inherits IMP::em2d::ImageReaderWriter.
Public Member Functions | |
SpiderImageReaderWriter () | |
SpiderImageReaderWriter (const String &filename, bool skip_type_check, bool force_reversed, bool skip_extra_checkings) | |
Full constructor. More... | |
void | read (const String &filename, em::ImageHeader &header, cv::Mat &data) const |
void | read_from_floats (const String &filename, em::ImageHeader &header, cv::Mat &data) const |
void | read_from_ints (const String &, em::ImageHeader &, cv::Mat &) const |
void | write (const String &filename, em::ImageHeader &header, const cv::Mat &data) const |
void | write_to_floats (const String &filename, em::ImageHeader &header, const cv::Mat &data) const |
Writes an EM image in Spider format. More... | |
void | write_to_ints (const String &, em::ImageHeader &, const cv::Mat &) const |
Public Member Functions inherited from IMP::em2d::ImageReaderWriter | |
virtual void | read (const String &filename, em::ImageHeader &header, cv::Mat &data) const =0 |
virtual void | read_from_floats (const String &filename, em::ImageHeader &header, cv::Mat &data) const =0 |
virtual void | read_from_ints (const String &filename, em::ImageHeader &header, cv::Mat &data) const =0 |
virtual void | write (const String &filename, em::ImageHeader &header, const cv::Mat &data) const =0 |
virtual void | write_to_floats (const String &filename, em::ImageHeader &header, const cv::Mat &data) const =0 |
virtual void | write_to_ints (const String &filename, em::ImageHeader &header, const cv::Mat &data) const =0 |
Public Member Functions inherited from IMP::base::Object | |
virtual void | clear_caches () |
virtual IMP::base::VersionInfo | get_version_info () const =0 |
Get information about the module and version of the object. | |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Public Attributes | |
String | filename_ |
bool | force_reversed_ |
bool | skip_extra_checkings_ |
bool | skip_type_check_ |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::base::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
Related Functions inherited from IMP::base::Object | |
typedef IMP::base::Vector < IMP::base::WeakPointer < Object > > | ObjectsTemp |
Class to read and write EM images in Spider format. They are stored in the header and data passed as arguments
Definition at line 31 of file SpiderImageReaderWriter.h.
IMP::em2d::SpiderImageReaderWriter::SpiderImageReaderWriter | ( | ) |
Empty constructor. It does not force reversed header and does not skip any of the tests
Definition at line 44 of file SpiderImageReaderWriter.h.
IMP::em2d::SpiderImageReaderWriter::SpiderImageReaderWriter | ( | const String & | filename, |
bool | skip_type_check, | ||
bool | force_reversed, | ||
bool | skip_extra_checkings | ||
) |
[in] | filename | file to read |
[in] | skip_type_check | if true, the check for type of image is skipped |
[in] | force_reversed | if true, the reverse mode is enforced for reading and writting |
[in] | skip_extra_checkings | if true, the most stringent tests for consistency of images are skipped when reading |
Definition at line 59 of file SpiderImageReaderWriter.h.
void IMP::em2d::SpiderImageReaderWriter::read_from_floats | ( | const String & | filename, |
em::ImageHeader & | header, | ||
cv::Mat & | data | ||
) | const |
Reads an image file in Spider format and stores the content int the header and data parameters
[in] | filename | file to read |
[in] | header | header to store the info |
[in] | data | a matrix to store the grid of data of the image |
The header format is already in Spider format, just read it
Definition at line 91 of file SpiderImageReaderWriter.h.
void IMP::em2d::SpiderImageReaderWriter::write_to_floats | ( | const String & | filename, |
em::ImageHeader & | header, | ||
const cv::Mat & | data | ||
) | const |
[in] | filename | file to write |
[in] | header | header with the image info |
[in] | data | a matrix with the grid of data of the image |
The image header is already in Spider format, just write it
Definition at line 134 of file SpiderImageReaderWriter.h.