IMP::core::BoxSweepClosePairsFinder Class Reference
Find all nearby pairs by sweeping the bounding boxes. More...
#include <IMP/core/BoxSweepClosePairsFinder.h>
Inheritance diagram for IMP::core::BoxSweepClosePairsFinder:Additional Inherited Members | |
| Public Member Functions inherited from IMP::core::ClosePairsFinder | |
| ClosePairsFinder (std::string name) | |
| ContainersTemp | get_input_containers (const ParticlesTemp &ps) const |
| ContainersTemp | get_input_containers (Particle *p) const |
| ParticlesTemp | get_input_particles (const ParticlesTemp &ps) const |
| ParticlesTemp | get_input_particles (Particle *p) const |
| ModelObjectsTemp | get_inputs (Model *m, const ParticleIndexes &pis) const |
| virtual ParticlePairsTemp | get_close_pairs (const ParticlesTemp &pc) const =0 |
| virtual ParticlePairsTemp | get_close_pairs (const ParticlesTemp &pca, const ParticlesTemp &pcb) const =0 |
| virtual ParticleIndexPairs | get_close_pairs (Model *m, const ParticleIndexes &pc) const |
| virtual ParticleIndexPairs | get_close_pairs (Model *m, const ParticleIndexes &pca, const ParticleIndexes &pcb) const |
| virtual IntPairs | get_close_pairs (const algebra::BoundingBox3Ds &bbs) const =0 |
| virtual IntPairs | get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const =0 |
| virtual void | set_distance (double d) |
| double | get_distance () const |
| void | remove_pair_filter (PairPredicate *d) |
| void | remove_pair_filters (const PairPredicates &d) |
| void | set_pair_filters (const PairPredicates &ps) |
| void | set_pair_filters_order (const PairPredicates &objs) |
| unsigned int | add_pair_filter (PairPredicate *obj) |
| void | add_pair_filters (const PairPredicates &objs) |
| void | clear_pair_filters () |
| unsigned int | get_number_of_pair_filters () const |
| bool | get_has_pair_filters () |
| PairPredicate * | get_pair_filter (unsigned int i) const |
| PairPredicates | get_pair_filters () const |
| void | reserve_pair_filters (unsigned int sz) |
| Protected Member Functions inherited from IMP::core::ClosePairsFinder | |
| virtual ModelObjectsTemp | do_get_inputs (Model *m, const ParticleIndexes &pis) const =0 |
| Related Functions inherited from IMP::base::Object | |
| typedef IMP::base::Vector < IMP::base::WeakPointer < Object > > | ObjectsTemp |
Detailed Description
This method is much faster than the quadratic one when there are are large sets of points.
The class BoxSweepClosePairsFinder requires CGAL in order to function.
- See Also
- IMP::container::ClosePairsScoreState
Definition at line 26 of file BoxSweepClosePairsFinder.h.
The documentation for this class was generated from the following file: