IMP::em::EnvelopePenetrationRestraint Class Reference
Calculate score based on fit to EM map.
#include <IMP/em/EnvelopePenetrationRestraint.h>
Inheritance diagram for IMP::em::EnvelopePenetrationRestraint:Public Member Functions | |
| EnvelopePenetrationRestraint (Particles ps, DensityMap *em_map, Float threshold) | |
| Constructor. More... | |
| unsigned int | add_particle (Particle *obj) |
| void | add_particles (const Particles &objs) |
| void | clear_particles () |
| virtual void | do_show (std::ostream &out) const |
| bool | get_has_particles () |
| unsigned int | get_number_of_particles () const |
| Particle * | get_particle (unsigned int i) const |
| Particles | get_particles () const |
| void | remove_particle (Particle *d) |
| void | remove_particles (const Particles &d) |
| void | reserve_particles (unsigned int sz) |
| void | set_particles (const Particles &ps) |
| void | set_particles_order (const Particles &objs) |
| Public Member Functions inherited from IMP::kernel::Restraint | |
| Restraint (Model *m, std::string name) | |
| void | add_score_and_derivatives (ScoreAccumulator sa) const |
| Restraint * | create_current_decomposition () const |
| Decompose this restraint into constituent terms for the current conf. More... | |
| Restraint * | create_decomposition () const |
| Decompose this restraint into constituent terms. More... | |
| virtual ScoringFunction * | create_scoring_function (double weight=1.0, double max=NO_MAX) const |
| ContainersTemp | get_input_containers () const |
| ParticlesTemp | get_input_particles () const |
| virtual double | get_last_score () const |
| double | get_score () const |
| bool | get_was_good () const |
| void | set_weight (Float weight) |
| Float | get_weight () const |
| double | get_maximum_score () const |
| void | set_maximum_score (double s) |
| Public Member Functions inherited from IMP::kernel::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| virtual IMP::base::VersionInfo | get_version_info () const =0 |
| Get information about the module and version of the object. | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::kernel::Restraint | |
| virtual void | do_add_score_and_derivatives (ScoreAccumulator sa) const |
| virtual Restraints | do_create_current_decomposition () const |
| virtual Restraints | do_create_decomposition () const |
| ModelObjectsTemp | do_get_outputs () const |
| virtual void | do_update_dependencies () |
| Related Functions inherited from IMP::kernel::Restraint | |
| typedef IMP::base::Vector < IMP::base::WeakPointer < Restraint > > | RestraintsTemp |
Detailed Description
Definition at line 29 of file EnvelopePenetrationRestraint.h.
Constructor & Destructor Documentation
| IMP::em::EnvelopePenetrationRestraint::EnvelopePenetrationRestraint | ( | Particles | ps, |
| DensityMap * | em_map, | ||
| Float | threshold | ||
| ) |
- Parameters
-
[in] ps The particles participating in the fitting score [in] em_map The density map used in the fitting score
- Note
- Particles that are rigid-bodies are interpolated and not resampled. This significantly reduces the running time but is less accurate. If the user prefers to get more accurate results, provide its members as input particles and not the rigid body.
The documentation for this class was generated from the following file: