IMP  2.0.1
The Integrative Modeling Platform
IMP::atom::WritePDBOptimizerState Class Reference

#include <IMP/atom/pdb.h>

+ Inheritance diagram for IMP::atom::WritePDBOptimizerState:

Public Member Functions

 WritePDBOptimizerState (const atom::Hierarchies &mh, std::string file_name)
 
void set_period (unsigned int p)
 
void write (std::string file_name, unsigned int call=0, bool append=false) const
 
- Public Member Functions inherited from IMP::kernel::OptimizerState
 OptimizerState (std::string name="OptimizerState %1%")
 
Optimizerget_optimizer () const
 
virtual void set_is_optimizing (bool)
 
virtual void update ()=0
 Called when the Optimizer accepts a new conformation.
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual IMP::base::VersionInfo get_version_info () const =0
 Get information about the module and version of the object.
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Related Functions

(Note that these are not member functions.)

typedef IMP::base::Vector
< IMP::base::WeakPointer
< WritePDBOptimizerState > > 
WritePDBOptimizerStatesTemp
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
- Protected Attributes inherited from IMP::kernel::OptimizerState
UncheckedWeakPointer< Optimizeroptimizer_
 

Detailed Description

This writes a PDB file at the specified interval during optimization. If the file name contains %1% then a new file is written each time with the %1% replaced by the index. Otherwise a new model is written each time to the same file.

Definition at line 443 of file pdb.h.

Constructor & Destructor Documentation

IMP::atom::WritePDBOptimizerState::WritePDBOptimizerState ( const atom::Hierarchies &  mh,
std::string  file_name 
)

Write to a file generated from the passed filename every skip_steps steps. The file_name constructor argument should contain "%1%" if you don't want to write the same file each time.

Definition at line 443 of file pdb.h.

Friends And Related Function Documentation

Pass a set of objects.

Definition at line 443 of file pdb.h.


The documentation for this class was generated from the following file: