Data Structure Index

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A	Cover (IMP::core)	IncreaseIndent (IMP)	PairsConstraint (IMP::container)	SimulationParameters (IMP::atom)
AllBipartitePairContainer (IMP::container)	CoverBond (IMP::atom)	IncrementalBallMover (IMP::core)	PairScore (IMP)	SingletonConstraint (IMP::core)
AllMol2Selector (IMP::atom)	CoverRefined (IMP::core)	IndexException (IMP)	PairScores (IMP)	SingletonContainer (IMP)
AllPairContainer (IMP::container)	Covers (IMP::core)	InternalException (IMP)	PairScoresTemp (IMP)	SingletonContainers (IMP)
AllPDBSelector (IMP::atom)	CoversTemp (IMP::core)	IntKey (IMP)	PairsGeometry (IMP::display)	SingletonContainerSet (IMP::container)
Angle (IMP::atom)	CPDBSelector (IMP::atom)	IOException (IMP)	PairsOptimizerState (IMP::container)	SingletonContainersTemp (IMP)
AngleRestraint (IMP::core)	Cylinder3D (IMP::algebra)	J	PairsRestraint (IMP::container)	SingletonFilter (IMP)
AngleSingletonScore (IMP::atom)	D	JNode (IMP::domino)	ParabolicFit (IMP::algebra)	SingletonFunctor (IMP)
AngleTripletScore (IMP::core)	Decorator (IMP)	JunctionTree (IMP::domino)	Particle (IMP)	SingletonGeometry (IMP::display)
ApplicationTestCase (IMP::test)	DeltaDistributionFunction (IMP::saxs)	K	ParticleEmbedding (IMP::statistics)	SingletonModifier (IMP)
Atom (IMP::atom)	DensityHeader (IMP::em)	KernelParameters (IMP::em)	ParticleKey (IMP)	SingletonRestraint (IMP::core)
ATOMPDBSelector (IMP::atom)	DensityMap (IMP::em)	KeyBase (IMP)	Particles (IMP)	SingletonsConstraint (IMP::container)
Atoms (IMP::atom)	DensityMaps (IMP::em)	KMeansClustering (IMP::statistics)	ParticlesTemp (IMP)	SingletonScore (IMP)
AtomsTemp (IMP::atom)	DensityMapsTemp (IMP::em)	KMLProxy (IMP::statistics)	ParticleTuple (IMP)	SingletonScores (IMP)
AtomType (IMP::atom)	DerivativeAccumulator (IMP)	L	PartitionalClustering (IMP::statistics)	SingletonScoresTemp (IMP)
AttributeSingletonScore (IMP::core)	DerivativesFromRefined (IMP::core)	LeavesRefiner (IMP::core)	PDBOptimizerState (IMP::display)	SingletonsGeometry (IMP::display)
B	DerivativesToRefined (IMP::core)	LennardJones (IMP::atom)	PDBSelector (IMP::atom)	SingletonsOptimizerState (IMP::container)
BallMover (IMP::core)	DiameterRestraint (IMP::core)	LennardJonesPairScore (IMP::atom)	PermutationSampler (IMP::domino)	SingletonsRestraint (IMP::container)
BildWriter (IMP::display)	Diffusion (IMP::atom)	Linear (IMP::core)	Plane3D (IMP::algebra)	SmoothingFunction (IMP::atom)
BinormalTerm (IMP::modeller)	Diffusions (IMP::atom)	LinearFit (IMP::algebra)	Pointer (IMP)	SolventAccessibleSurface (IMP::saxs)
Bond (IMP::atom)	DiffusionsTemp (IMP::atom)	ListPairContainer (IMP::container)	PPDBSelector (IMP::atom)	SphereD (IMP::algebra)
Bonded (IMP::atom)	Dihedral (IMP::atom)	ListQuadContainer (IMP::container)	Profile (IMP::saxs)	SphereDistancePairScore (IMP::core)
BondedPairFilter (IMP::atom)	DihedralRestraint (IMP::core)	ListSingletonContainer (IMP::container)	ProteinLigandAtomPairScore (IMP::atom)	SphereDistanceToSingletonScore (IMP::core)
Bondeds (IMP::atom)	DihedralSingletonScore (IMP::atom)	ListTripletContainer (IMP::container)	ProteinLigandRestraint (IMP::atom)	SpherePatch3D (IMP::algebra)
BondedsTemp (IMP::atom)	DirectorObjectChecker (IMP::test)	LogOptimizerState (IMP::display)	PymolWriter (IMP::display)	SphericalVector3D (IMP::algebra)
BondEndpointsRefiner (IMP::atom)	DiscreteSampler (IMP::domino)	LogPairScore (IMP::misc)	Q	SpiderHeader (IMP::em)
BondGraph (IMP::atom)	Display (IMP::restrainer)	LogPairScore (IMP::test)	QuadConstraint (IMP::core)	SpiderImageReaderWriter (IMP::em)
BondPairContainer (IMP::atom)	DisplayModelOnFailure (IMP::display)	LowestRefinedPairScore (IMP::misc)	QuadContainer (IMP)	SpiderMapReaderWriter (IMP::em)
Bonds (IMP::atom)	DistancePairScore (IMP::core)	M	QuadContainers (IMP)	StateAdaptor (IMP::misc)
BondSingletonScore (IMP::atom)	DistanceRestraint (IMP::core)	MapFilterByThreshold (IMP::em)	QuadContainerSet (IMP::container)	SteepestDescent (IMP::core)
BondsTemp (IMP::atom)	DistanceToSingletonScore (IMP::core)	MappedDiscreteSet (IMP::domino)	QuadContainersTemp (IMP)	StereochemistryPairFilter (IMP::atom)
BoundingBox3DSingletonScore (IMP::core)	Distribution (IMP::saxs)	Mass (IMP::atom)	QuadFilter (IMP)	StringKey (IMP)
BoundingBoxD (IMP::algebra)	Domain (IMP::atom)	Matrix2D (IMP::algebra)	QuadFunctor (IMP)	SurfaceShellDensityMap (IMP::em)
BrownianDynamics (IMP::atom)	Domains (IMP::atom)	Matrix3D (IMP::algebra)	QuadModifier (IMP)	SymmetrySampler (IMP::domino)
C	DomainsTemp (IMP::atom)	MaximumPairRestraint (IMP::container)	QuadraticClosePairsFinder (IMP::core)	T
CAlphaPDBSelector (IMP::atom)	DominoOptimizer (IMP::domino)	MaximumPairScore (IMP::container)	QuadRestraint (IMP::core)	TableRefiner (IMP::core)
CartesianProductSampler (IMP::domino)	DumpModelOnFailure (IMP)	MaximumQuadRestraint (IMP::container)	QuadsConstraint (IMP::container)	TestCase (IMP::test)
CBetaPDBSelector (IMP::atom)	E	MaximumQuadScore (IMP::container)	QuadScore (IMP)	TestRefiner (IMP::test)
Centroid (IMP::core)	EditGuard (IMP::core)	MaximumSingletonRestraint (IMP::container)	QuadScores (IMP)	TextInput (IMP)
CentroidOfRefined (IMP::core)	ElementTable (IMP::atom)	MaximumSingletonScore (IMP::container)	QuadScoresTemp (IMP)	TextOutput (IMP)
Centroids (IMP::core)	Ellipsoid3D (IMP::algebra)	MaximumTripletRestraint (IMP::container)	QuadsOptimizerState (IMP::container)	Transform (IMP::core)
CentroidsTemp (IMP::core)	Embedding (IMP::statistics)	MaximumTripletScore (IMP::container)	QuadsRestraint (IMP::container)	Transformation (IMP::domino)
Chain (IMP::atom)	ExampleComplexRestraint (IMP::example)	MCCGSampler (IMP::core)	QuasiNewton (IMP::gsl)	Transformation2D (IMP::algebra)
ChainPDBSelector (IMP::atom)	ExampleDecorator (IMP::example)	MinimumPairRestraint (IMP::container)	R	Transformation3D (IMP::algebra)
Chains (IMP::atom)	ExampleRefCounted (IMP::example)	MinimumPairScore (IMP::container)	RadialDistributionFunction (IMP::saxs)	TransformationDiscreteSet (IMP::domino)
ChainsTemp (IMP::atom)	ExampleRestraint (IMP::example)	MinimumQuadRestraint (IMP::container)	RadiusDependentKernelParameters (IMP::em)	TransformationMappedDiscreteSet (IMP::domino)
Charged (IMP::atom)	ExampleSingletonModifier (IMP::example)	MinimumQuadScore (IMP::container)	RAII (IMP)	TransformationPermutationSampler (IMP::domino)
CHARMMAtom (IMP::atom)	ExampleTemplateClass (IMP::example)	MinimumSingletonRestraint (IMP::container)	RefCountChecker (IMP::test)	TransformedDistancePairScore (IMP::core)
CHARMMAtomTopology (IMP::atom)	ExampleUnaryFunction (IMP::example)	MinimumSingletonScore (IMP::container)	RefCounted (IMP)	TripletConstraint (IMP::core)
CHARMMBond (IMP::atom)	Exception (IMP)	MinimumTripletRestraint (IMP::container)	RefinedPairsPairScore (IMP::core)	TripletContainer (IMP)
CHARMMBondEndpoint (IMP::atom)	ExcludedVolumeRestraint (IMP::core)	MinimumTripletScore (IMP::container)	Refiner (IMP)	TripletContainers (IMP)
CHARMMBondParameters (IMP::atom)	F	Model (IMP)	Representation (IMP::restrainer)	TripletContainerSet (IMP::container)
CHARMMDihedralParameters (IMP::atom)	FailureHandler (IMP)	ModelException (IMP)	Residue (IMP::atom)	TripletContainersTemp (IMP)
CHARMMIdealResidueTopology (IMP::atom)	FailureHandlerBase (IMP)	ModellerRestraints (IMP::modeller)	Residues (IMP::atom)	TripletFilter (IMP)
CHARMMParameters (IMP::atom)	FilterByThreshold (IMP::em)	ModelLoader (IMP::modeller)	ResiduesTemp (IMP::atom)	TripletFunctor (IMP)
CHARMMPatch (IMP::atom)	FilterGeometry (IMP::display)	ModifierVisitor (IMP::core)	ResidueType (IMP::atom)	TripletModifier (IMP)
CHARMMResidueTopology (IMP::atom)	FitRestraint (IMP::em)	Mol2Selector (IMP::atom)	Restraint (IMP::restrainer)	TripletRestraint (IMP::core)
CHARMMResidueTopologyBase (IMP::atom)	FixedRefiner (IMP::core)	MolecularDynamics (IMP::atom)	Restraint (IMP::saxs)	TripletsConstraint (IMP::container)
CHARMMSegmentTopology (IMP::atom)	FixedXYZ (IMP::algebra)	MonteCarlo (IMP::core)	Restraint (IMP)	TripletScore (IMP)
CHARMMTopology (IMP::atom)	FixedZYZ (IMP::algebra)	Mover (IMP::core)	RestraintEvaluator (IMP::domino)	TripletScores (IMP)
ChecksScoreState (IMP::core)	FloatKey (IMP)	MoverBase (IMP::core)	RestraintEvaluatorFromFile (IMP::domino)	TripletScoresTemp (IMP)
ChildrenRefiner (IMP::core)	ForceFieldParameters (IMP::atom)	Movers (IMP::core)	RestraintEvaluatorI (IMP::domino)	TripletsOptimizerState (IMP::container)
ChimeraWriter (IMP::display)	ForceSwitch (IMP::atom)	MoversTemp (IMP::core)	RestraintGraph (IMP::domino)	TripletsRestraint (IMP::container)
CloseBipartitePairContainer (IMP::container)	FormFactorTable (IMP::saxs)	MRCHeader (IMP::em)	Restraints (IMP)	TruncatedHarmonic (IMP::core)
ClosedCubicSpline (IMP::core)	Fragment (IMP::atom)	MRCReaderWriter (IMP::em)	RestraintSet (IMP)	TypedPairScore (IMP::core)
ClosePairContainer (IMP::container)	Fragments (IMP::atom)	MultiArray (IMP::algebra)	RestraintsTemp (IMP)	U
ClosePairsFinder (IMP::core)	FragmentsTemp (IMP::atom)	MultipleBinormalRestraint (IMP::modeller)	RigidBody (IMP::core)	UnaryFunction (IMP)
ClosePairsPairScore (IMP::core)	G	N	RigidBodyDistancePairScore (IMP::core)	UsageException (IMP)
CMMWriter (IMP::display)	GenericHierarchies (IMP::core)	NearestNeighborD (IMP::algebra)	RigidBodyMover (IMP::core)	V
CoarseCC (IMP::em)	GenericHierarchiesTemp (IMP::core)	NonAlternativePDBSelector (IMP::atom)	RigidClosePairsFinder (IMP::core)	ValueException (IMP)
CoarseCCatIntervals (IMP::em)	Geometry (IMP::display)	NonhydrogenMol2Selector (IMP::atom)	RigidMember (IMP::core)	VectorD (IMP::algebra)
CoarseConvolution (IMP::em)	GeometryProcessor (IMP::display)	NonWaterNonHydrogenPDBSelector (IMP::atom)	RigidMembers (IMP::core)	VectorDEmbedding (IMP::statistics)
Color (IMP::display)	Grid3D (IMP::algebra)	NonWaterPDBSelector (IMP::atom)	RigidMembersTemp (IMP::core)	VectorOfRefCounted (IMP)
Colored (IMP::display)	GridClosePairsFinder (IMP::core)	NormalizedSphereDistancePairScore (IMP::core)	Rotation2D (IMP::algebra)	VelocityScalingOptimizerState (IMP::atom)
CombState (IMP::domino)	GridRangeD (IMP::algebra)	NormalMover (IMP::core)	Rotation3D (IMP::algebra)	VersionInfo (IMP)
CommonEndpointPairFilter (IMP::misc)	GSLOptimizer (IMP::gsl)	NPDBSelector (IMP::atom)	S	Volume (IMP::em)
Cone3D (IMP::algebra)	H	O	SampledDensityMap (IMP::em)	VolumeRestraint (IMP::core)
ConfigurationSet (IMP)	Harmonic (IMP::core)	Object (IMP)	Sampler (IMP)	Voxel (IMP::em)
ConfigurationSetXYZEmbedding (IMP::statistics)	HarmonicLowerBound (IMP::core)	ObjectKey (IMP)	SaveOptimizeds (IMP)	W
ConjugateGradients (IMP::gsl)	HarmonicUpperBound (IMP::core)	OpenCubicSpline (IMP::core)	ScopedFailureHandler (IMP)	WaterPDBSelector (IMP::atom)
ConjugateGradients (IMP::core)	Hierarchies (IMP::atom)	Optimizer (IMP)	Score (IMP::saxs)	WeakPointer (IMP)
ConnectingPairContainer (IMP::core)	HierarchiesTemp (IMP::atom)	OptimizerState (IMP)	ScoreState (IMP)	WeightedSphereDistancePairScore (IMP::core)
ConnectivityRestraint (IMP::core)	Hierarchy (IMP::atom)	OptimizerStates (IMP)	ScoreStatePointer (IMP)	WormLikeChain (IMP::misc)
ConstantRestraint (IMP::core)	Hierarchy (IMP::core)	OptimizerStatesTemp (IMP)	ScoreStates (IMP)	Writer (IMP::display)
ConstPairScore (IMP::test)	HierarchyCounter (IMP::core)	P	ScoreStatesTemp (IMP)	X
ConstQuadScore (IMP::test)	HierarchyPrinter (IMP::core)	PairConstraint (IMP::core)	Segment3D (IMP::algebra)	XMLDisplay (IMP::restrainer)
Constraint (IMP)	HierarchyTraits (IMP::core)	PairContainer (IMP)	SetLogState (IMP)	XMLRepresentation (IMP::restrainer)
ConstSingletonScore (IMP::test)	HierarchyVisitor (IMP::core)	PairContainers (IMP)	SetLogTarget (IMP)	XMLRestraint (IMP::restrainer)
ConstTripletScore (IMP::test)	HighDensityEmbedding (IMP::statistics)	PairContainerSet (IMP::container)	SimpleConnectivity (IMP::helper)	XYZ (IMP::core)
ConstUnaryFunction (IMP::test)	HydrogenPDBSelector (IMP::atom)	PairContainersTemp (IMP)	SimpleDiameter (IMP::helper)	XYZR (IMP::core)
Container (IMP)	I	PairFilter (IMP)	SimpleDistance (IMP::helper)	XYZRs (IMP::core)
Containers (IMP)	Image (IMP::em)	PairFunctor (IMP)	SimpleEMFit (IMP::helper)	XYZRsTemp (IMP::core)
ContainersTemp (IMP)	ImageHeader (IMP::em)	PairGeometry (IMP::display)	SimpleExcludedVolume (IMP::helper)	XYZs (IMP::core)
Cosine (IMP::core)	IMPRestraints (IMP::modeller)	PairModifier (IMP)	Simplex (IMP::gsl)	XYZsTemp (IMP::core)
CoulombPairScore (IMP::atom)	ImproperSingletonScore (IMP::atom)	PairRestraint (IMP::core)

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