|
| Cover (IMP::core) | IncreaseIndent (IMP) | PairsConstraint (IMP::container) | SimulationParameters (IMP::atom) |
| AllBipartitePairContainer (IMP::container) | CoverBond (IMP::atom) | IncrementalBallMover (IMP::core) | PairScore (IMP) | SingletonConstraint (IMP::core) |
| AllMol2Selector (IMP::atom) | CoverRefined (IMP::core) | IndexException (IMP) | PairScores (IMP) | SingletonContainer (IMP) |
| AllPairContainer (IMP::container) | Covers (IMP::core) | InternalException (IMP) | PairScoresTemp (IMP) | SingletonContainers (IMP) |
| AllPDBSelector (IMP::atom) | CoversTemp (IMP::core) | IntKey (IMP) | PairsGeometry (IMP::display) | SingletonContainerSet (IMP::container) |
| Angle (IMP::atom) | CPDBSelector (IMP::atom) | IOException (IMP) | PairsOptimizerState (IMP::container) | SingletonContainersTemp (IMP) |
| AngleRestraint (IMP::core) | Cylinder3D (IMP::algebra) |
| PairsRestraint (IMP::container) | SingletonFilter (IMP) |
| AngleSingletonScore (IMP::atom) |
| JNode (IMP::domino) | ParabolicFit (IMP::algebra) | SingletonFunctor (IMP) |
| AngleTripletScore (IMP::core) | Decorator (IMP) | JunctionTree (IMP::domino) | Particle (IMP) | SingletonGeometry (IMP::display) |
| ApplicationTestCase (IMP::test) | DeltaDistributionFunction (IMP::saxs) |
| ParticleEmbedding (IMP::statistics) | SingletonModifier (IMP) |
| Atom (IMP::atom) | DensityHeader (IMP::em) | KernelParameters (IMP::em) | ParticleKey (IMP) | SingletonRestraint (IMP::core) |
| ATOMPDBSelector (IMP::atom) | DensityMap (IMP::em) | KeyBase (IMP) | Particles (IMP) | SingletonsConstraint (IMP::container) |
| Atoms (IMP::atom) | DensityMaps (IMP::em) | KMeansClustering (IMP::statistics) | ParticlesTemp (IMP) | SingletonScore (IMP) |
| AtomsTemp (IMP::atom) | DensityMapsTemp (IMP::em) | KMLProxy (IMP::statistics) | ParticleTuple (IMP) | SingletonScores (IMP) |
| AtomType (IMP::atom) | DerivativeAccumulator (IMP) |
| PartitionalClustering (IMP::statistics) | SingletonScoresTemp (IMP) |
| AttributeSingletonScore (IMP::core) | DerivativesFromRefined (IMP::core) | LeavesRefiner (IMP::core) | PDBOptimizerState (IMP::display) | SingletonsGeometry (IMP::display) |
|
| DerivativesToRefined (IMP::core) | LennardJones (IMP::atom) | PDBSelector (IMP::atom) | SingletonsOptimizerState (IMP::container) |
| BallMover (IMP::core) | DiameterRestraint (IMP::core) | LennardJonesPairScore (IMP::atom) | PermutationSampler (IMP::domino) | SingletonsRestraint (IMP::container) |
| BildWriter (IMP::display) | Diffusion (IMP::atom) | Linear (IMP::core) | Plane3D (IMP::algebra) | SmoothingFunction (IMP::atom) |
| BinormalTerm (IMP::modeller) | Diffusions (IMP::atom) | LinearFit (IMP::algebra) | Pointer (IMP) | SolventAccessibleSurface (IMP::saxs) |
| Bond (IMP::atom) | DiffusionsTemp (IMP::atom) | ListPairContainer (IMP::container) | PPDBSelector (IMP::atom) | SphereD (IMP::algebra) |
| Bonded (IMP::atom) | Dihedral (IMP::atom) | ListQuadContainer (IMP::container) | Profile (IMP::saxs) | SphereDistancePairScore (IMP::core) |
| BondedPairFilter (IMP::atom) | DihedralRestraint (IMP::core) | ListSingletonContainer (IMP::container) | ProteinLigandAtomPairScore (IMP::atom) | SphereDistanceToSingletonScore (IMP::core) |
| Bondeds (IMP::atom) | DihedralSingletonScore (IMP::atom) | ListTripletContainer (IMP::container) | ProteinLigandRestraint (IMP::atom) | SpherePatch3D (IMP::algebra) |
| BondedsTemp (IMP::atom) | DirectorObjectChecker (IMP::test) | LogOptimizerState (IMP::display) | PymolWriter (IMP::display) | SphericalVector3D (IMP::algebra) |
| BondEndpointsRefiner (IMP::atom) | DiscreteSampler (IMP::domino) | LogPairScore (IMP::misc) |
| SpiderHeader (IMP::em) |
| BondGraph (IMP::atom) | Display (IMP::restrainer) | LogPairScore (IMP::test) | QuadConstraint (IMP::core) | SpiderImageReaderWriter (IMP::em) |
| BondPairContainer (IMP::atom) | DisplayModelOnFailure (IMP::display) | LowestRefinedPairScore (IMP::misc) | QuadContainer (IMP) | SpiderMapReaderWriter (IMP::em) |
| Bonds (IMP::atom) | DistancePairScore (IMP::core) |
| QuadContainers (IMP) | StateAdaptor (IMP::misc) |
| BondSingletonScore (IMP::atom) | DistanceRestraint (IMP::core) | MapFilterByThreshold (IMP::em) | QuadContainerSet (IMP::container) | SteepestDescent (IMP::core) |
| BondsTemp (IMP::atom) | DistanceToSingletonScore (IMP::core) | MappedDiscreteSet (IMP::domino) | QuadContainersTemp (IMP) | StereochemistryPairFilter (IMP::atom) |
| BoundingBox3DSingletonScore (IMP::core) | Distribution (IMP::saxs) | Mass (IMP::atom) | QuadFilter (IMP) | StringKey (IMP) |
| BoundingBoxD (IMP::algebra) | Domain (IMP::atom) | Matrix2D (IMP::algebra) | QuadFunctor (IMP) | SurfaceShellDensityMap (IMP::em) |
| BrownianDynamics (IMP::atom) | Domains (IMP::atom) | Matrix3D (IMP::algebra) | QuadModifier (IMP) | SymmetrySampler (IMP::domino) |
|
| DomainsTemp (IMP::atom) | MaximumPairRestraint (IMP::container) | QuadraticClosePairsFinder (IMP::core) |
|
| CAlphaPDBSelector (IMP::atom) | DominoOptimizer (IMP::domino) | MaximumPairScore (IMP::container) | QuadRestraint (IMP::core) | TableRefiner (IMP::core) |
| CartesianProductSampler (IMP::domino) | DumpModelOnFailure (IMP) | MaximumQuadRestraint (IMP::container) | QuadsConstraint (IMP::container) | TestCase (IMP::test) |
| CBetaPDBSelector (IMP::atom) |
| MaximumQuadScore (IMP::container) | QuadScore (IMP) | TestRefiner (IMP::test) |
| Centroid (IMP::core) | EditGuard (IMP::core) | MaximumSingletonRestraint (IMP::container) | QuadScores (IMP) | TextInput (IMP) |
| CentroidOfRefined (IMP::core) | ElementTable (IMP::atom) | MaximumSingletonScore (IMP::container) | QuadScoresTemp (IMP) | TextOutput (IMP) |
| Centroids (IMP::core) | Ellipsoid3D (IMP::algebra) | MaximumTripletRestraint (IMP::container) | QuadsOptimizerState (IMP::container) | Transform (IMP::core) |
| CentroidsTemp (IMP::core) | Embedding (IMP::statistics) | MaximumTripletScore (IMP::container) | QuadsRestraint (IMP::container) | Transformation (IMP::domino) |
| Chain (IMP::atom) | ExampleComplexRestraint (IMP::example) | MCCGSampler (IMP::core) | QuasiNewton (IMP::gsl) | Transformation2D (IMP::algebra) |
| ChainPDBSelector (IMP::atom) | ExampleDecorator (IMP::example) | MinimumPairRestraint (IMP::container) |
| Transformation3D (IMP::algebra) |
| Chains (IMP::atom) | ExampleRefCounted (IMP::example) | MinimumPairScore (IMP::container) | RadialDistributionFunction (IMP::saxs) | TransformationDiscreteSet (IMP::domino) |
| ChainsTemp (IMP::atom) | ExampleRestraint (IMP::example) | MinimumQuadRestraint (IMP::container) | RadiusDependentKernelParameters (IMP::em) | TransformationMappedDiscreteSet (IMP::domino) |
| Charged (IMP::atom) | ExampleSingletonModifier (IMP::example) | MinimumQuadScore (IMP::container) | RAII (IMP) | TransformationPermutationSampler (IMP::domino) |
| CHARMMAtom (IMP::atom) | ExampleTemplateClass (IMP::example) | MinimumSingletonRestraint (IMP::container) | RefCountChecker (IMP::test) | TransformedDistancePairScore (IMP::core) |
| CHARMMAtomTopology (IMP::atom) | ExampleUnaryFunction (IMP::example) | MinimumSingletonScore (IMP::container) | RefCounted (IMP) | TripletConstraint (IMP::core) |
| CHARMMBond (IMP::atom) | Exception (IMP) | MinimumTripletRestraint (IMP::container) | RefinedPairsPairScore (IMP::core) | TripletContainer (IMP) |
| CHARMMBondEndpoint (IMP::atom) | ExcludedVolumeRestraint (IMP::core) | MinimumTripletScore (IMP::container) | Refiner (IMP) | TripletContainers (IMP) |
| CHARMMBondParameters (IMP::atom) |
| Model (IMP) | Representation (IMP::restrainer) | TripletContainerSet (IMP::container) |
| CHARMMDihedralParameters (IMP::atom) | FailureHandler (IMP) | ModelException (IMP) | Residue (IMP::atom) | TripletContainersTemp (IMP) |
| CHARMMIdealResidueTopology (IMP::atom) | FailureHandlerBase (IMP) | ModellerRestraints (IMP::modeller) | Residues (IMP::atom) | TripletFilter (IMP) |
| CHARMMParameters (IMP::atom) | FilterByThreshold (IMP::em) | ModelLoader (IMP::modeller) | ResiduesTemp (IMP::atom) | TripletFunctor (IMP) |
| CHARMMPatch (IMP::atom) | FilterGeometry (IMP::display) | ModifierVisitor (IMP::core) | ResidueType (IMP::atom) | TripletModifier (IMP) |
| CHARMMResidueTopology (IMP::atom) | FitRestraint (IMP::em) | Mol2Selector (IMP::atom) | Restraint (IMP::restrainer) | TripletRestraint (IMP::core) |
| CHARMMResidueTopologyBase (IMP::atom) | FixedRefiner (IMP::core) | MolecularDynamics (IMP::atom) | Restraint (IMP::saxs) | TripletsConstraint (IMP::container) |
| CHARMMSegmentTopology (IMP::atom) | FixedXYZ (IMP::algebra) | MonteCarlo (IMP::core) | Restraint (IMP) | TripletScore (IMP) |
| CHARMMTopology (IMP::atom) | FixedZYZ (IMP::algebra) | Mover (IMP::core) | RestraintEvaluator (IMP::domino) | TripletScores (IMP) |
| ChecksScoreState (IMP::core) | FloatKey (IMP) | MoverBase (IMP::core) | RestraintEvaluatorFromFile (IMP::domino) | TripletScoresTemp (IMP) |
| ChildrenRefiner (IMP::core) | ForceFieldParameters (IMP::atom) | Movers (IMP::core) | RestraintEvaluatorI (IMP::domino) | TripletsOptimizerState (IMP::container) |
| ChimeraWriter (IMP::display) | ForceSwitch (IMP::atom) | MoversTemp (IMP::core) | RestraintGraph (IMP::domino) | TripletsRestraint (IMP::container) |
| CloseBipartitePairContainer (IMP::container) | FormFactorTable (IMP::saxs) | MRCHeader (IMP::em) | Restraints (IMP) | TruncatedHarmonic (IMP::core) |
| ClosedCubicSpline (IMP::core) | Fragment (IMP::atom) | MRCReaderWriter (IMP::em) | RestraintSet (IMP) | TypedPairScore (IMP::core) |
| ClosePairContainer (IMP::container) | Fragments (IMP::atom) | MultiArray (IMP::algebra) | RestraintsTemp (IMP) |
|
| ClosePairsFinder (IMP::core) | FragmentsTemp (IMP::atom) | MultipleBinormalRestraint (IMP::modeller) | RigidBody (IMP::core) | UnaryFunction (IMP) |
| ClosePairsPairScore (IMP::core) |
|
| RigidBodyDistancePairScore (IMP::core) | UsageException (IMP) |
| CMMWriter (IMP::display) | GenericHierarchies (IMP::core) | NearestNeighborD (IMP::algebra) | RigidBodyMover (IMP::core) |
|
| CoarseCC (IMP::em) | GenericHierarchiesTemp (IMP::core) | NonAlternativePDBSelector (IMP::atom) | RigidClosePairsFinder (IMP::core) | ValueException (IMP) |
| CoarseCCatIntervals (IMP::em) | Geometry (IMP::display) | NonhydrogenMol2Selector (IMP::atom) | RigidMember (IMP::core) | VectorD (IMP::algebra) |
| CoarseConvolution (IMP::em) | GeometryProcessor (IMP::display) | NonWaterNonHydrogenPDBSelector (IMP::atom) | RigidMembers (IMP::core) | VectorDEmbedding (IMP::statistics) |
| Color (IMP::display) | Grid3D (IMP::algebra) | NonWaterPDBSelector (IMP::atom) | RigidMembersTemp (IMP::core) | VectorOfRefCounted (IMP) |
| Colored (IMP::display) | GridClosePairsFinder (IMP::core) | NormalizedSphereDistancePairScore (IMP::core) | Rotation2D (IMP::algebra) | VelocityScalingOptimizerState (IMP::atom) |
| CombState (IMP::domino) | GridRangeD (IMP::algebra) | NormalMover (IMP::core) | Rotation3D (IMP::algebra) | VersionInfo (IMP) |
| CommonEndpointPairFilter (IMP::misc) | GSLOptimizer (IMP::gsl) | NPDBSelector (IMP::atom) |
| Volume (IMP::em) |
| Cone3D (IMP::algebra) |
|
| SampledDensityMap (IMP::em) | VolumeRestraint (IMP::core) |
| ConfigurationSet (IMP) | Harmonic (IMP::core) | Object (IMP) | Sampler (IMP) | Voxel (IMP::em) |
| ConfigurationSetXYZEmbedding (IMP::statistics) | HarmonicLowerBound (IMP::core) | ObjectKey (IMP) | SaveOptimizeds (IMP) |
|
| ConjugateGradients (IMP::gsl) | HarmonicUpperBound (IMP::core) | OpenCubicSpline (IMP::core) | ScopedFailureHandler (IMP) | WaterPDBSelector (IMP::atom) |
| ConjugateGradients (IMP::core) | Hierarchies (IMP::atom) | Optimizer (IMP) | Score (IMP::saxs) | WeakPointer (IMP) |
| ConnectingPairContainer (IMP::core) | HierarchiesTemp (IMP::atom) | OptimizerState (IMP) | ScoreState (IMP) | WeightedSphereDistancePairScore (IMP::core) |
| ConnectivityRestraint (IMP::core) | Hierarchy (IMP::atom) | OptimizerStates (IMP) | ScoreStatePointer (IMP) | WormLikeChain (IMP::misc) |
| ConstantRestraint (IMP::core) | Hierarchy (IMP::core) | OptimizerStatesTemp (IMP) | ScoreStates (IMP) | Writer (IMP::display) |
| ConstPairScore (IMP::test) | HierarchyCounter (IMP::core) |
| ScoreStatesTemp (IMP) |
|
| ConstQuadScore (IMP::test) | HierarchyPrinter (IMP::core) | PairConstraint (IMP::core) | Segment3D (IMP::algebra) | XMLDisplay (IMP::restrainer) |
| Constraint (IMP) | HierarchyTraits (IMP::core) | PairContainer (IMP) | SetLogState (IMP) | XMLRepresentation (IMP::restrainer) |
| ConstSingletonScore (IMP::test) | HierarchyVisitor (IMP::core) | PairContainers (IMP) | SetLogTarget (IMP) | XMLRestraint (IMP::restrainer) |
| ConstTripletScore (IMP::test) | HighDensityEmbedding (IMP::statistics) | PairContainerSet (IMP::container) | SimpleConnectivity (IMP::helper) | XYZ (IMP::core) |
| ConstUnaryFunction (IMP::test) | HydrogenPDBSelector (IMP::atom) | PairContainersTemp (IMP) | SimpleDiameter (IMP::helper) | XYZR (IMP::core) |
| Container (IMP) |
| PairFilter (IMP) | SimpleDistance (IMP::helper) | XYZRs (IMP::core) |
| Containers (IMP) | Image (IMP::em) | PairFunctor (IMP) | SimpleEMFit (IMP::helper) | XYZRsTemp (IMP::core) |
| ContainersTemp (IMP) | ImageHeader (IMP::em) | PairGeometry (IMP::display) | SimpleExcludedVolume (IMP::helper) | XYZs (IMP::core) |
| Cosine (IMP::core) | IMPRestraints (IMP::modeller) | PairModifier (IMP) | Simplex (IMP::gsl) | XYZsTemp (IMP::core) |
| CoulombPairScore (IMP::atom) | ImproperSingletonScore (IMP::atom) | PairRestraint (IMP::core) |
