Public Types | |
Public Member Functions | |
| void | clear () |
| Clear header data and sets a consistent header. | |
| char * | get_date () const |
| void | get_dimensions (float &Zdim, float &Ydim, float &Xdim) const |
| Get info about volume dimension from the header. | |
| void | get_dimensions (float &Ydim, float &Xdim) const |
| Get info about the image dimension from the header. | |
| template<typename T > | |
| void | get_euler_angles (T &Phi, T &Theta, T &Psi) const |
| template<typename T > | |
| void | get_euler_angles1 (T &Phi1, T &Theta1, T &Psi1) const |
| template<typename T > | |
| void | get_euler_angles2 (T &Phi2, T &Theta2, T &Psi2) const |
| float | get_fAngle1 () const |
| get rotation angle. (Xmipp compatibility) | |
| float | get_fAv () const |
| float | get_fFlag () const |
| Gets the fFlag. | |
| float | get_fFmax () const |
| float | get_fFmin () const |
| IMP::algebra::Matrix2D< double > | get_fGeo_matrix () |
| float | get_fIangle () const |
| float | get_fIform () const |
| float | get_fIhist () const |
| float | get_fImami () const |
| float | get_fLabbyt () const |
| float | get_fLabrec () const |
| float | get_fLenbyt () const |
| float | get_Flip () const |
| float | get_fNlabel () const |
| float | get_fNrec () const |
| float | get_fSig () const |
| int | get_header_size () const |
| get header size | |
| float | get_image_type () const |
| Get the type of image. | |
| float | get_number_of_columns () const |
| Get number columns. | |
| float | get_number_of_rows () const |
| Get number of rows. | |
| float | get_number_of_slices () const |
| Get number of slices. | |
| float | get_object_pixel_size () const |
| float | get_old_rot () const |
| get rotation angle. (Xmipp compatibility) | |
| template<typename T > | |
| void | get_origin_offsets (T &Zoff, T &Yoff, T &Xoff) const |
| template<typename T > | |
| void | get_origin_offsets (T &Yoff, T &Xoff) const |
| float | get_Phi () const |
| float | get_Phi1 () const |
| float | get_Phi2 () const |
| float | get_Psi () const |
| float | get_Psi1 () const |
| float | get_Psi2 () const |
| bool | get_reversed () const |
| Interaction with data. | |
| float | get_Scale () const |
| float | get_Theta () const |
| float | get_Theta1 () const |
| float | get_Theta2 () const |
| char * | get_time () const |
| char * | get_title () const |
| float | get_Weight () const |
| float | get_xorigin () const |
| float | get_yorigin () const |
| float | get_zorigin () const |
| ImageHeader (float im) | |
| Constructor. The type of image can be specified. | |
| ImageHeader (img_type im) | |
| Constructor. The type of image can be specified. | |
| ImageHeader () | |
| Constructor. | |
| bool | is_normalized () const |
| void | print_hard (std::ostream &out) const |
| Prints a reduced set of information (debugging purposes). | |
| bool | read (std::ifstream &f, bool skip_type_check=false, bool force_reversed=false, bool skip_extra_checkings=false) |
| Reads the header of a EM image from an input file stream. | |
| int | read (const String filename, bool skip_type_check=false, bool force_reversed=false, bool skip_extra_checkings=false) |
| Reads the header of a EM image. | |
| void | set_date () |
| void | set_dimensions (float Zdim, float Ydim, float Xdim) |
| Set info about volume dimension in the header. | |
| void | set_dimensions (float Ydim, float Xdim) |
| Set info about the image dimension in the header. | |
| void | set_euler_angles (float Phi, float Theta, float Psi) |
| void | set_euler_angles1 (float Phi1, float Theta1, float Psi1) |
| void | set_euler_angles2 (float Phi2, float Theta2, float Psi2) |
| void | set_fAngle1 (float value) |
| set rotation angle. (Xmipp compatibility) | |
| void | set_fAv (float value) |
| void | set_fFlag (float value) |
| Sets the fFlag. | |
| void | set_fFmax (float value) |
| void | set_fFmin (float value) |
| void | set_fIangle (float value) |
| void | set_fIform (float value) |
| void | set_fIhist (float value) |
| void | set_fImami (float value) |
| void | set_fLabbyt (float value) |
| void | set_fLabrec (float value) |
| void | set_fLenbyt (float value) |
| void | set_Flip (float value) |
| void | set_fNlabel (float value) |
| void | set_fNrec (float value) |
| void | set_fSig (float value) |
| void | set_header () |
| Sets a consistent header. | |
| void | set_image_type (float im) |
| Set the type of image. | |
| void | set_image_type (img_type im) |
| Set the type of image. | |
| void | set_number_of_columns (float n) |
| Get number columns. | |
| void | set_number_of_rows (float n) |
| Set number of rows. | |
| void | set_number_of_slices (float n) |
| Set number of slices. | |
| void | set_object_pixel_size (float value) |
| void | set_old_rot (float value) |
| set rotation angle. (Xmipp compatibility) | |
| void | set_origin_offsets (float Zoff, float Yoff, float Xoff) |
| void | set_origin_offsets (float Yoff, float Xoff) |
| void | set_Phi (float value) |
| void | set_Phi1 (float value) |
| void | set_Phi2 (float value) |
| void | set_Psi (float value) |
| void | set_Psi1 (float value) |
| void | set_Psi2 (float value) |
| void | set_reversed (bool value) |
| Interaction with data. | |
| void | set_Scale (float value) |
| void | set_Theta (float value) |
| void | set_Theta1 (float value) |
| void | set_Theta2 (float value) |
| void | set_time () |
| void | set_title (String newName) |
| Set title of image in the header. | |
| void | set_Weight (float value) |
| void | set_xorigin (float value) |
| void | set_yorigin (float value) |
| void | set_zorigin (float value) |
| void | show_projection_params (std::ostream &out) const |
| Shows only the projection parameters. | |
| void | write (std::ofstream &f, bool force_reversed=false) |
| Writes the header of a EM image to an output file stream. | |
| void | write (const String &filename, bool force_reversed=false) |
| Writes the header of a EM image. | |
Static Public Attributes | |
| IMG_BYTE = _IMP_em.ImageHeader_IMG_BYTE | |
| IMG_FOURIER = _IMP_em.ImageHeader_IMG_FOURIER | |
| IMG_IMPEM = _IMP_em.ImageHeader_IMG_IMPEM | |
| IMG_INT = _IMP_em.ImageHeader_IMG_INT | |
| VOL_BYTE = _IMP_em.ImageHeader_VOL_BYTE | |
| VOL_FOURIER = _IMP_em.ImageHeader_VOL_FOURIER | |
| VOL_IMPEM = _IMP_em.ImageHeader_VOL_IMPEM | |
| VOL_INT = _IMP_em.ImageHeader_VOL_INT | |
Friends | |
| std::ostream & | operator<< (std::ostream &out, const ImageHeader &I) |
| Output operator. | |
| float IMP::em::ImageHeader::get_fFlag | ( | ) | const |
Gets the fFlag.
fFlag contains the number of triads of Euler angles stored in the header (up to three). set_euler_angles2 makes fFlag=2, set_euler_angles1 makes fFlag=max(fFlag, 1), set_euler_angles does not change fFlag
| void IMP::em::ImageHeader::set_fFlag | ( | float | value | ) |
Sets the fFlag.
fFlag contains the number of triads of Euler angles stored in the header (up to three). set_euler_angles2 makes fFlag=2, set_euler_angles1 makes fFlag=max(fFlag, 1), set_euler_angles does not change fFlag
| void IMP::em::ImageHeader::set_image_type | ( | float | im | ) |
Set the type of image.
param[in] im type of image. Available values:
| void IMP::em::ImageHeader::set_image_type | ( | img_type | im | ) |
Set the type of image.
param[in] im type of image. Available values: IMG_BYTE = 0, IMG_IMPEM = 1,IMG_INT = 9, VOL_BYTE = 2, VOL_IMPEM = 3, VOL_INT = 10 , IMG_FOURIER = -1, VOL_FOURIER = -3
