Class Hierarchy

Go to the graphical class hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• IMP::atom::AtomType
• IMP::modeller::BinormalTerm
• IMP::atom::BondGraph
• IMP::algebra::BoundingBoxD< D >
• IMP::atom::CHARMMAtomTopology
• IMP::atom::CHARMMBond< D >
• IMP::atom::CHARMMBondEndpoint
• IMP::atom::CHARMMBondParameters
• IMP::atom::CHARMMDihedralParameters
• IMP::atom::CHARMMResidueTopologyBase
  • IMP::atom::CHARMMIdealResidueTopology
    • IMP::atom::CHARMMResidueTopology
  • IMP::atom::CHARMMPatch
• IMP::em::CoarseCC
  • IMP::em::CoarseCCatIntervals
• IMP::em::CoarseConvolution
• IMP::display::Color
• IMP::domino::CombState
• IMP::algebra::Cone3D
• IMP::ContainersTemp
  • IMP::Containers
• IMP::algebra::Cylinder3D
• IMP::Decorator
  • IMP::atom::Angle
  • IMP::atom::Bond
  • IMP::atom::Bonded
  • IMP::atom::Dihedral
  • IMP::atom::Mass
  • IMP::atom::SimulationParameters
  • IMP::core::Hierarchy
    • IMP::atom::Hierarchy
      • IMP::atom::Atom
        • IMP::atom::CHARMMAtom
      • IMP::atom::Chain
      • IMP::atom::Domain
      • IMP::atom::Fragment
      • IMP::atom::Residue
  • IMP::core::XYZ
    • IMP::atom::Charged
    • IMP::atom::Diffusion
    • IMP::core::Centroid
    • IMP::core::RigidBody
    • IMP::core::RigidMember
    • IMP::core::XYZR
      • IMP::atom::LennardJones
      • IMP::core::Cover
  • IMP::display::Colored
  • IMP::domino::Transformation
  • IMP::em::Voxel
  • IMP::example::ExampleDecorator
• IMP::em::DensityHeader
• IMP::em::DensityMapsTemp
  • IMP::em::DensityMaps
• IMP::DerivativeAccumulator
• IMP::test::DirectorObjectChecker
• IMP::domino::DiscreteSampler
  • IMP::domino::CartesianProductSampler
  • IMP::domino::PermutationSampler
    • IMP::domino::TransformationPermutationSampler
  • IMP::domino::SymmetrySampler
• IMP::restrainer::Display
• IMP::saxs::Distribution< ValueT >
• IMP::saxs::Distribution< algebra::Vector3D >
  • IMP::saxs::DeltaDistributionFunction
• IMP::saxs::Distribution< Float >
  • IMP::saxs::RadialDistributionFunction
• IMP::atom::ElementTable
• IMP::algebra::Ellipsoid3D
• IMP::example::ExampleTemplateClass< D >
• IMP::Exception
  • IMP::IndexException
  • IMP::InternalException
  • IMP::IOException
  • IMP::ModelException
  • IMP::UsageException
  • IMP::ValueException
• IMP::em::FilterByThreshold< T, D >
• IMP::algebra::FixedXYZ
• IMP::algebra::FixedZYZ
• IMP::FloatKey
• IMP::saxs::FormFactorTable
• IMP::display::GeometryProcessor
  • IMP::display::FilterGeometry
  • IMP::display::Writer
    • IMP::display::BildWriter
    • IMP::display::ChimeraWriter
    • IMP::display::CMMWriter
    • IMP::display::PymolWriter
• IMP::algebra::Grid3D< VT >
• IMP::algebra::GridRangeD< D >
• IMP::core::HierarchyPrinter< PD >
• IMP::core::HierarchyTraits
• IMP::core::HierarchyVisitor
  • IMP::core::HierarchyCounter
  • IMP::core::ModifierVisitor
• IMP::em::Image< T >
• IMP::em::ImageHeader
• IMP::modeller::IMPRestraints
• IMP::IntKey
• IMP::domino::JNode
• IMP::domino::JunctionTree
• IMP::em::KernelParameters
• IMP::KeyBase< ID, LazyAdd >
• IMP::statistics::KMLProxy
• IMP::algebra::LinearFit
• IMP::em::MapFilterByThreshold
• IMP::domino::MappedDiscreteSet
  • IMP::domino::TransformationMappedDiscreteSet
• IMP::modeller::ModelLoader
• IMP::atom::Mol2Selector
  • IMP::atom::AllMol2Selector
  • IMP::atom::NonhydrogenMol2Selector
• IMP::core::MoversTemp
  • IMP::core::Movers
• IMP::em::MRCHeader
• IMP::em::MRCReaderWriter
• IMP::algebra::MultiArray< T, D >
• IMP::algebra::MultiArray< T, 2 >
  • IMP::algebra::Matrix2D< T >
• IMP::algebra::MultiArray< T, 3 >
  • IMP::algebra::Matrix3D< T >
• IMP::algebra::NearestNeighborD< D >
• IMP::ObjectKey
• IMP::OptimizerStatesTemp
  • IMP::OptimizerStates
• IMP::PairContainersTemp
  • IMP::PairContainers
• IMP::PairFunctor
• IMP::PairScoresTemp
  • IMP::PairScores
• IMP::algebra::ParabolicFit
• IMP::ParticleKey
• IMP::ParticlesTemp
  • IMP::atom::BondedsTemp
  • IMP::atom::BondsTemp
  • IMP::core::GenericHierarchiesTemp
    • IMP::atom::HierarchiesTemp
      • IMP::atom::AtomsTemp
      • IMP::atom::ChainsTemp
      • IMP::atom::DomainsTemp
      • IMP::atom::FragmentsTemp
      • IMP::atom::Hierarchies
        • IMP::atom::Atoms
        • IMP::atom::Chains
        • IMP::atom::Domains
        • IMP::atom::Fragments
        • IMP::atom::Residues
      • IMP::atom::ResiduesTemp
    • IMP::core::GenericHierarchies
  • IMP::core::XYZsTemp
    • IMP::atom::DiffusionsTemp
    • IMP::core::CentroidsTemp
    • IMP::core::RigidMembersTemp
    • IMP::core::XYZRsTemp
      • IMP::core::CoversTemp
  • IMP::Particles
    • IMP::atom::Bondeds
    • IMP::atom::Bonds
    • IMP::core::XYZs
      • IMP::atom::Diffusions
      • IMP::core::Centroids
      • IMP::core::RigidMembers
      • IMP::core::XYZRs
        • IMP::core::Covers
• IMP::ParticleTuple< D >
• IMP::atom::PDBSelector
  • IMP::atom::AllPDBSelector
  • IMP::atom::NonAlternativePDBSelector
    • IMP::atom::ATOMPDBSelector
    • IMP::atom::CAlphaPDBSelector
    • IMP::atom::CBetaPDBSelector
    • IMP::atom::ChainPDBSelector
    • IMP::atom::CPDBSelector
    • IMP::atom::HydrogenPDBSelector
    • IMP::atom::NonWaterNonHydrogenPDBSelector
    • IMP::atom::NonWaterPDBSelector
    • IMP::atom::NPDBSelector
    • IMP::atom::PPDBSelector
    • IMP::atom::WaterPDBSelector
• IMP::algebra::Plane3D
• IMP::saxs::Profile
• IMP::QuadContainersTemp
  • IMP::QuadContainers
• IMP::QuadFunctor
• IMP::QuadScoresTemp
  • IMP::QuadScores
• IMP::em::RadiusDependentKernelParameters
• IMP::RAII
  • IMP::core::EditGuard< Container >
  • IMP::IncreaseIndent
  • IMP::SaveOptimizeds
  • IMP::ScopedFailureHandler
  • IMP::ScoreStatePointer
  • IMP::SetLogState
  • IMP::SetLogTarget
• IMP::test::RefCountChecker
• IMP::RefCounted
  • IMP::example::ExampleRefCounted
  • IMP::Object
    • IMP::atom::CHARMMResidueTopology
    • IMP::atom::CHARMMSegmentTopology
    • IMP::atom::CHARMMTopology
    • IMP::atom::ForceFieldParameters
      • IMP::atom::CHARMMParameters
    • IMP::atom::SmoothingFunction
      • IMP::atom::ForceSwitch
    • IMP::ConfigurationSet
    • IMP::Container
      • IMP::PairContainer
        • IMP::atom::BondPairContainer
        • IMP::container::AllBipartitePairContainer
        • IMP::container::AllPairContainer
        • IMP::container::CloseBipartitePairContainer
        • IMP::container::ClosePairContainer
        • IMP::container::ListPairContainer
        • IMP::container::PairContainerSet
        • IMP::core::ConnectingPairContainer
      • IMP::Particle
      • IMP::QuadContainer
        • IMP::container::ListQuadContainer
        • IMP::container::QuadContainerSet
      • IMP::SingletonContainer
        • IMP::container::ListSingletonContainer
        • IMP::container::SingletonContainerSet
      • IMP::TripletContainer
        • IMP::container::ListTripletContainer
        • IMP::container::TripletContainerSet
    • IMP::core::ClosePairsFinder
      • IMP::core::GridClosePairsFinder
      • IMP::core::QuadraticClosePairsFinder
      • IMP::core::RigidClosePairsFinder
    • IMP::core::Mover
      • IMP::core::IncrementalBallMover
      • IMP::core::MoverBase
        • IMP::core::BallMover
        • IMP::core::NormalMover
      • IMP::core::RigidBodyMover
    • IMP::display::Geometry
      • IMP::display::FilterGeometry
      • IMP::display::PairGeometry
      • IMP::display::PairsGeometry
      • IMP::display::SingletonGeometry
      • IMP::display::SingletonsGeometry
    • IMP::display::Writer
    • IMP::em::DensityMap
      • IMP::em::SampledDensityMap
        • IMP::em::SurfaceShellDensityMap
    • IMP::FailureHandler
      • IMP::display::DisplayModelOnFailure
      • IMP::DumpModelOnFailure
      • IMP::FailureHandlerBase
    • IMP::Model
    • IMP::Optimizer
      • IMP::atom::BrownianDynamics
      • IMP::atom::MolecularDynamics
      • IMP::core::ConjugateGradients
      • IMP::core::MonteCarlo
      • IMP::core::SteepestDescent
      • IMP::domino::DominoOptimizer
      • IMP::gsl::GSLOptimizer
        • IMP::gsl::ConjugateGradients
        • IMP::gsl::QuasiNewton
        • IMP::gsl::Simplex
    • IMP::OptimizerState
      • IMP::atom::VelocityScalingOptimizerState
      • IMP::container::PairsOptimizerState
      • IMP::container::QuadsOptimizerState
      • IMP::container::SingletonsOptimizerState
      • IMP::container::TripletsOptimizerState
      • IMP::display::LogOptimizerState
      • IMP::display::PDBOptimizerState
    • IMP::PairFilter
      • IMP::atom::BondedPairFilter
      • IMP::atom::StereochemistryPairFilter
      • IMP::misc::CommonEndpointPairFilter
    • IMP::PairModifier
    • IMP::PairScore
      • IMP::atom::CoulombPairScore
      • IMP::atom::LennardJonesPairScore
      • IMP::atom::ProteinLigandAtomPairScore
      • IMP::container::MaximumPairScore
      • IMP::container::MinimumPairScore
      • IMP::core::ClosePairsPairScore
      • IMP::core::DistancePairScore
      • IMP::core::NormalizedSphereDistancePairScore
      • IMP::core::RefinedPairsPairScore
      • IMP::core::RigidBodyDistancePairScore
      • IMP::core::SphereDistancePairScore
      • IMP::core::TransformedDistancePairScore
      • IMP::core::TypedPairScore
      • IMP::core::WeightedSphereDistancePairScore
      • IMP::misc::LogPairScore
      • IMP::misc::LowestRefinedPairScore
      • IMP::test::ConstPairScore
      • IMP::test::LogPairScore
    • IMP::QuadFilter
    • IMP::QuadModifier
    • IMP::QuadScore
      • IMP::container::MaximumQuadScore
      • IMP::container::MinimumQuadScore
      • IMP::test::ConstQuadScore
    • IMP::Refiner
      • IMP::atom::BondEndpointsRefiner
      • IMP::core::ChildrenRefiner
      • IMP::core::FixedRefiner
      • IMP::core::LeavesRefiner
      • IMP::core::TableRefiner
      • IMP::test::TestRefiner
    • IMP::Restraint
      • IMP::atom::ProteinLigandRestraint
      • IMP::container::MaximumPairRestraint
      • IMP::container::MaximumQuadRestraint
      • IMP::container::MaximumSingletonRestraint
      • IMP::container::MaximumTripletRestraint
      • IMP::container::MinimumPairRestraint
      • IMP::container::MinimumQuadRestraint
      • IMP::container::MinimumSingletonRestraint
      • IMP::container::MinimumTripletRestraint
      • IMP::container::PairsRestraint
      • IMP::container::QuadsRestraint
      • IMP::container::SingletonsRestraint
      • IMP::container::TripletsRestraint
      • IMP::core::ConnectivityRestraint
      • IMP::core::ConstantRestraint
      • IMP::core::DiameterRestraint
      • IMP::core::DihedralRestraint
      • IMP::core::DistanceRestraint
      • IMP::core::ExcludedVolumeRestraint
      • IMP::core::PairRestraint
      • IMP::core::QuadRestraint
      • IMP::core::SingletonRestraint
      • IMP::core::TripletRestraint
        • IMP::core::AngleRestraint
      • IMP::core::VolumeRestraint
      • IMP::em::FitRestraint
      • IMP::example::ExampleComplexRestraint
      • IMP::example::ExampleRestraint
      • IMP::modeller::ModellerRestraints
      • IMP::modeller::MultipleBinormalRestraint
      • IMP::RestraintSet
      • IMP::saxs::Restraint
    • IMP::Sampler
      • IMP::core::MCCGSampler
    • IMP::ScoreState
      • IMP::Constraint
        • IMP::container::PairsConstraint
        • IMP::container::QuadsConstraint
        • IMP::container::SingletonsConstraint
        • IMP::container::TripletsConstraint
        • IMP::core::PairConstraint
        • IMP::core::QuadConstraint
        • IMP::core::SingletonConstraint
        • IMP::core::TripletConstraint
      • IMP::core::ChecksScoreState
      • IMP::misc::StateAdaptor
    • IMP::SingletonFilter
    • IMP::SingletonModifier
      • IMP::atom::CoverBond
      • IMP::core::CentroidOfRefined
      • IMP::core::CoverRefined
      • IMP::core::DerivativesFromRefined
      • IMP::core::DerivativesToRefined
      • IMP::core::Transform
      • IMP::example::ExampleSingletonModifier
    • IMP::SingletonScore
      • IMP::atom::AngleSingletonScore
      • IMP::atom::BondSingletonScore
      • IMP::atom::DihedralSingletonScore
      • IMP::atom::ImproperSingletonScore
      • IMP::container::MaximumSingletonScore
      • IMP::container::MinimumSingletonScore
      • IMP::core::AttributeSingletonScore
      • IMP::core::BoundingBox3DSingletonScore
      • IMP::core::DistanceToSingletonScore
      • IMP::core::SphereDistanceToSingletonScore
      • IMP::test::ConstSingletonScore
    • IMP::statistics::Embedding
      • IMP::statistics::ConfigurationSetXYZEmbedding
      • IMP::statistics::HighDensityEmbedding
      • IMP::statistics::ParticleEmbedding
      • IMP::statistics::VectorDEmbedding< D >
    • IMP::statistics::PartitionalClustering
      • IMP::statistics::KMeansClustering
    • IMP::TripletFilter
    • IMP::TripletModifier
    • IMP::TripletScore
      • IMP::container::MaximumTripletScore
      • IMP::container::MinimumTripletScore
      • IMP::core::AngleTripletScore
      • IMP::test::ConstTripletScore
    • IMP::UnaryFunction
      • IMP::core::ClosedCubicSpline
      • IMP::core::Cosine
      • IMP::core::Harmonic
        • IMP::core::HarmonicLowerBound
        • IMP::core::HarmonicUpperBound
      • IMP::core::Linear
      • IMP::core::OpenCubicSpline
      • IMP::core::TruncatedHarmonic< DIRECTION >
      • IMP::example::ExampleUnaryFunction
      • IMP::misc::WormLikeChain
      • IMP::test::ConstUnaryFunction
  • IMP::saxs::Score
• IMP::restrainer::Representation
• IMP::atom::ResidueType
• IMP::restrainer::Restraint
• IMP::domino::RestraintEvaluatorI
  • IMP::domino::RestraintEvaluator
  • IMP::domino::RestraintEvaluatorFromFile
• IMP::domino::RestraintGraph
• IMP::RestraintsTemp
  • IMP::Restraints
• IMP::algebra::Rotation2D
• IMP::algebra::Rotation3D
• IMP::ScoreStatesTemp
  • IMP::ScoreStates
• IMP::algebra::Segment3D
• IMP::helper::SimpleConnectivity
• IMP::helper::SimpleDiameter
• IMP::helper::SimpleDistance
• IMP::helper::SimpleEMFit
• IMP::helper::SimpleExcludedVolume
• IMP::SingletonContainersTemp
  • IMP::SingletonContainers
• IMP::SingletonFunctor
• IMP::SingletonScoresTemp
  • IMP::SingletonScores
• IMP::saxs::SolventAccessibleSurface
• IMP::algebra::SphereD< D >
• IMP::algebra::SphereD< 3 >
• IMP::algebra::SpherePatch3D
• IMP::algebra::SphericalVector3D
• IMP::em::SpiderHeader
• IMP::em::SpiderImageReaderWriter< T >
• IMP::em::SpiderMapReaderWriter
• IMP::StringKey
• IMP::test::TestCase
  • IMP::test::ApplicationTestCase
• IMP::TextInput
• IMP::TextOutput
• IMP::algebra::Transformation2D
• IMP::algebra::Transformation3D
• IMP::domino::TransformationDiscreteSet
• IMP::TripletContainersTemp
  • IMP::TripletContainers
• IMP::TripletFunctor
• IMP::TripletScoresTemp
  • IMP::TripletScores
• IMP::algebra::VectorD< D >
• IMP::algebra::VectorD< 3 >
• IMP::VectorOfRefCounted< RC, Policy >
• IMP::VersionInfo
• IMP::em::Volume< T >
• IMP::WeakPointer< O >
• IMP::WeakPointer< O >
  • IMP::Pointer< O >
• IMP::restrainer::XMLDisplay
• IMP::restrainer::XMLRepresentation
• IMP::restrainer::XMLRestraint