IMP::core::ClosePairsPairScore Class Reference

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Detailed Description

Traverse the Refiner hierarchy to find all pairs which are close.

The Refiner implicitly defines a tree rooted at each particle. This PairScore applies another PairScore to all pairs of leaves, one taken from each tree such that the leaves are closer than the threshold.

Note:

All particles in the tree must be XYZR particles for the passed radius. In addition, the ball defined by a particle must contain the balls of all its leaves.

See also:

ClosePairsScoreState

Inheritance diagram for IMP::core::ClosePairsPairScore:

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Public Member Functions
	ClosePairsPairScore (Refiner *r, PairScore *f, Float max_distance, FloatKey rk=XYZR::get_default_radius_key())
ContainersTemp	get_input_containers (const ParticlePair &p) const
ParticlesTemp	get_input_particles (const ParticlePair &p) const
ParticlesList	get_interacting_particles (const ParticlePair &p) const
bool	get_is_changed (const ParticlePair &pp) const
	IMP_PAIR_SCORE_BASE (ClosePairsPairScore)

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Constructor & Destructor Documentation

IMP::core::ClosePairsPairScore::ClosePairsPairScore	(	Refiner *	r,
		PairScore *	f,
		Float	max_distance,
		FloatKey	rk = XYZR::get_default_radius_key()
	)

Parameters:

[in]	r	The Refiner to call on each particle
[in]	f	The pair score to apply to the generated pairs
[in]	max_distance	Only score pairs which are close than the max_distance
[in]	rk	The key to use for the radius.

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The documentation for this class was generated from the following files:

• ClosePairsPairScore.h
• core/__init__.py