IMP::atom::Atom Class Reference
[Hierarchies of particles]

Detailed Description

A decorator for a particle representing an atom.

Inheritance diagram for IMP::atom::Atom:


Public Member Functions
	Atom (::IMP::Particle *p)
AtomType	get_atom_type () const
Element	get_element () const
Particle *	get_particle () const
void	set_atom_type (AtomType t)
	Set the name and corresponding element and mass.
The atom index in the input file
This index is not necessarily unique over any particular set of atoms and so should never be used as an atom identifier except during I/O.
Int	get_input_index () const
void	set_input_index (Int t)
Static Public Member Functions
static Atom	decorate_particle (::IMP::Particle *p)
static bool	particle_is_instance (Particle *p)
	return true if the particle has the needed attributes
static Atom	setup_particle (Particle *p, Atom o)
static Atom	setup_particle (Particle *p, AtomType t)
Keys
These methods provide access to the various keys used to store things in the Atom. These can be used if you want to use an attribute to search a set of particles.
static IntKey	get_atom_type_key ()
static IntKey	get_element_key ()
static IntKey	get_input_index_key ()

static Atom IMP::atom::Atom::setup_particle	(	Particle *	p,
		Atom	o
	)			`[static]`

Create a decorator by copying from o.

static Atom IMP::atom::Atom::setup_particle	(	Particle *	p,
		AtomType	t
	)			`[static]`

Create a decorator with the passed type and coordinates.

The documentation for this class was generated from the following files: