IMP::QuadContainer Class Reference

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Detailed Description

A shared container for particle_quads.

Stores a searchable shared collection of particle_quads.

Implementors

Developers who wish to implement a QuadContainer should inherit from this class and use the IMP_QUAD_CONTAINER() macro to help define the needed functions. Lamentably, we do not provide an example.

Inheritance diagram for IMP::QuadContainer:

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Public Member Functions
virtual void	apply (const QuadModifier *sm, DerivativeAccumulator &da)=0
	Apply a SingletonModifier to the contents.
virtual void	apply (const QuadModifier *sm)=0
	Apply a SingletonModifier to the contents.
virtual double	evaluate (const QuadScore *s, DerivativeAccumulator *da) const =0
	Avaluate a score on the contents.
virtual bool	get_contains_particle_quad (const ParticleQuad &v) const =0
virtual unsigned int	get_number_of_particle_quads () const =0
	return the number of particle_quads in the container
virtual ParticleQuad	get_particle_quad (unsigned int i) const =0
ParticleQuadsTemp	get_particle_quads () const
ParticleQuadIterator	particle_quads_begin () const
	begin iterating through the particle_quads
ParticleQuadIterator	particle_quads_end () const
	iterate through the particle_quads
	QuadContainer (std::string name="QuadContainer %1%")
Incremental Scoring
When incremental scoring is used, the container keeps track of changes to it since the last Model::evaluate() call. Warning: ParticleQuadContainer::get_removed_quads_container() has not been stabilized and is likely to change without notice. The address of the objects returned should not change over the lifetime of this container (but, of course, their contents will).
virtual double	evaluate_change (const QuadScore *o, DerivativeAccumulator *da) const =0
virtual double	evaluate_prechange (const QuadScore *o, DerivativeAccumulator *da) const =0
QuadContainer *	get_added_quads_container () const
QuadContainer *	get_removed_quads_container () const
Protected Member Functions
void	set_added_and_removed_containers (QuadContainer *added, QuadContainer *removed)
Friends
template<class T >
void	IMP::internal::unref (T *)

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Member Function Documentation

virtual double IMP::QuadContainer::evaluate_change	(	const QuadScore *	o,
		DerivativeAccumulator *	da
	)			const [pure virtual]

Return the change in score (and derivatives) since the last evaluate of the current contents of the container.

virtual double IMP::QuadContainer::evaluate_prechange	(	const QuadScore *	o,
		DerivativeAccumulator *	da
	)			const [pure virtual]

Return the score of the last evaluate for the current contents of the container.

virtual bool IMP::QuadContainer::get_contains_particle_quad

(

const ParticleQuad &

v

)

const [pure virtual]

Note:

This function may be linear. Be aware of the complexity bounds of your particular container.

virtual unsigned int IMP::QuadContainer::get_number_of_particle_quads

(

)

const [pure virtual]

return the number of particle_quads in the container

Note:

this isn't always constant time

void IMP::QuadContainer::set_added_and_removed_containers	(	QuadContainer *	added,
		QuadContainer *	removed
	)			[protected]

Containers must have containers that keep track of the particles which have been added or since the last step. These containers must be registered with the parent QuadContainer.

Containers which are themselves returned by the get_added/removed functions do not have to register such containers.

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The documentation for this class was generated from the following files:

• QuadContainer.h
• __init__.py