A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

D

IMPRestraints (IMP.modeller)

PartitionalClustering (IMP::statistics)

Showable (IMP)

AddFloatFlag (IMP)

ImproperSingletonScore (IMP::atom)

PartitionalClusteringWithCenter (IMP::statistics)

SigmoidRestraintSphere (IMP::pmi)

AddIntFlag (IMP)

Database2 (IMP.EMageFit.database)

InBoundingBox3DSingletonPredicate (IMP::core)

PathLocalPlanner (IMP::kinematics)

SimpleAssignmentsTable (IMP::domino)

AddScores (IMP::score_functor)

DataObject (IMP::core)

InContainerPairFilter (IMP::container)

PCAAligner (IMP::em)

SimpleLoadLink (IMP::rmf)

AddStringFlag (IMP)

DataPointsAssignment (IMP::multifit)

InContainerQuadFilter (IMP::container)

PCAFitRestraint (IMP::em)

SimpleSaveLink (IMP::rmf)

AdvancedFlag (IMP)

DecayPairContainerOptimizerState (IMP::misc)

InContainerSingletonFilter (IMP::container)

PCAFitRestraint (IMP::em2d)

Simplex (IMP::gsl)

Alignment (IMP.pmi.analysis)

Decorator (IMP)

InContainerTripletFilter (IMP::container)

PDBSelector (IMP::atom)

Simulator (IMP::atom)

AlignmentClustering (IMP.multifit.cluster)

DefaultEmbeddingD (IMP::algebra)

IncrementalScoringFunction (IMP::core)

PermutationStates (IMP::domino)

SingleLinkage (IMP::em2d)

AlignSymmetric (IMP::cnmultifit)

DegreesOfFreedom (IMP.pmi.dof)

Index (IMP)

Pipe (IMP.isd.utils)

SingletonConstraint (IMP::core)

AllBipartitePairContainer (IMP::container)

DeltaDistributionFunction (IMP::saxs)

IndexException (IMP)

PivyWriter (IMP::display)

SingletonContainer (IMP)

AllMol2Selector (IMP::atom)

Demuxer (IMP.isd.demux_trajs)

IndexStates (IMP::domino)

Plane3D (IMP::algebra)

SingletonContainerAdaptor (IMP)

AllPairContainer (IMP::container)

DenseFloatLogGridKD (IMP::algebra)

IndexVector (IMP)

PlaneGeometry (IMP::display)

SingletonContainerSet (IMP::container)

AllPDBSelector (IMP::atom)

DenseGrid3D (IMP::algebra)

InitialDockingFromXlinks (IMP.EMageFit.buildxlinks)

Pointer (IMP)

SingletonContainerStatistics (IMP::container)

AllSamePairPredicate (IMP::core)

DenseGridStorageD (IMP::algebra)

InputAdaptor (IMP)

PointerMember (IMP)

SingletonGeometry (IMP::display)

AllSameQuadPredicate (IMP::core)

DenseIntLogGrid3D (IMP::algebra)

InternalException (IMP)

PointGeometry (IMP::display)

SingletonModifier (IMP)

AllSameSingletonPredicate (IMP::core)

DensityDataPoints (IMP::multifit)

IntsOrder (IMP::em2d)

PolarResamplingParameters (IMP::em2d)

SingletonPredicate (IMP)

AllSameTripletPredicate (IMP::core)

DensityFillingRestraint (IMP::em)

IOException (IMP)

PolygonGeometry (IMP::display)

SingletonRestraint (IMP::core)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

DensityHeader (IMP::em)

IsCollisionPairPredicate (IMP::core)

PPDBSelector (IMP::atom)

SingletonsConstraint (IMP::container)

AmbiguousNOERestraint (IMP::isd)

DensityMap (IMP::em)

IsosurfaceGeometry (IMP::display)

Precision (IMP.pmi.analysis)

SingletonScore (IMP)

AmbiguousRestraint (IMP::isd)

DependencyScoreState (IMP::domino)

J

PredicatePairsRestraint (IMP::container)

SingletonsGeometry (IMP::display)

Analysis (IMP.isd.Analysis)

DerivativeAccumulator (IMP)

PredicateQuadsRestraint (IMP::container)

SingletonsOptimizerState (IMP::container)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DerivativeCalculator (IMP::saxs)

JeffreysRestraint (IMP::isd)

PredicateSingletonScore (IMP::core)

SingletonsRestraint (IMP::container)

AnchorsData (IMP::multifit)

DerivativesFromRefined (IMP::core)

Joint (IMP::kinematics)

PredicateSingletonsRestraint (IMP::container)

SingletonStatistical (IMP::score_functor)

AndPDBSelector (IMP::atom)

DerivativesToRefined (IMP::core)

JPGImageReaderWriter (IMP::em2d)

PredicateTripletsRestraint (IMP::container)

SkinSurfaceGeometry (IMP::display)

Angle (IMP::atom)

DiameterRestraint (IMP::core)

K

PrincipalComponentAnalysisD (IMP::algebra)

Slave (IMP.parallel)

AngleRestraint (IMP::core)

Diffusion (IMP::atom)

PrismaticJoint (IMP::kinematics)

SlaveArray (IMP.parallel)

AngleSingletonScore (IMP::atom)

Dihedral (IMP::atom)

KClosePairsPairScore (IMP::core)

ProbabilisticAnchorGraph (IMP::multifit)

Slice (IMP::domino)

AngleTripletScore (IMP::core)

DihedralAngleRevoluteJoint (IMP::kinematics)

KernelParameters (IMP::em)

ProbabilisticSubsetFilterTable (IMP::domino)

SmoothingFunction (IMP::atom)

AngularVelocity (IMP::atom)

DihedralRestraint (IMP::core)

Key (IMP)

ProcessOutput (IMP.pmi.output)

Soap (IMP::score_functor)

ApplicationTestCase (IMP.test)

DihedralSingletonScore (IMP::atom)

KinematicForest (IMP::kinematics)

Profile (IMP::saxs)

SoapPairFilter (IMP::atom)

Array (IMP)

DirectorObjectChecker (IMP.test)

KinematicForestScoreState (IMP::kinematics)

ProfileClustering (IMP::saxs)

SoftCylinderPairScore (IMP::misc)

AssemblyHeader (IMP::multifit)

DiscreteSampler (IMP::domino)

KinematicNode (IMP::kinematics)

ProfileFitter (IMP::saxs)

SoftSpherePairScore (IMP::core)

Assignment (IMP::domino)

DisjointSetsSubsetFilterTable (IMP::domino)

KMeans (IMP::kmeans)

Profiler (IMP::benchmark)

SolventAccessibleSurface (IMP::saxs)

AssignmentContainer (IMP::domino)

DistanceFilter (IMP::em2d)

L

ProjectingOptions (IMP::em2d)

SparseGrid3D (IMP::algebra)

AssignmentsTable (IMP::domino)

DistanceFilterTable (IMP::em2d)

ProjectingParameters (IMP::em2d)

SparseGridStorageD (IMP::algebra)

Atom (IMP::atom)

DistanceMask (IMP::em)

LabelGeometry (IMP::display)

ProjectionFinder (IMP::em2d)

SparseSymmetricPairMemoizer (IMP)

AtomicCrossLinkMSRestraint (IMP::isd)

DistancePairScore (IMP::core)

LangevinThermostatOptimizerState (IMP::atom)

ProjectionMask (IMP::em2d)

SparseUnboundedGrid3D (IMP::algebra)

ATOMPDBSelector (IMP::atom)

DistancePairScore (IMP::score_functor)

LeavesRefiner (IMP::core)

ProjectionParameters (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

AtomType (IMP::atom)

DistanceRestraint (IMP::core)

LennardJones (IMP::atom)

ProjectionParametersScoreState (IMP::em2d)

SphereD (IMP::algebra)

AttributeOptimizer (IMP)

DistributePairsScoreState (IMP::container)

LennardJonesPairScore (IMP::atom)

ProjectionStates (IMP::em2d)

SphereDistance (IMP::score_functor)

AttributeSingletonPredicate (IMP::core)

DistributeQuadsScoreState (IMP::container)

LessPairBySecond (IMP::em2d)

ProteinKinematics (IMP::kinematics)

SphereDistancePairScore (IMP::core)

AverageDistanceLinkage (IMP::em2d)

DistributeSingletonsScoreState (IMP::container)

Linear (IMP::core)

ProteinLigandAtomPairScore (IMP::atom)

SphereDistanceToSingletonScore (IMP::core)

B

DistributeTripletsScoreState (IMP::container)

Linear1DFunction (IMP::isd)

ProteinLigandRestraint (IMP::atom)

SphereGeometry (IMP::display)

Distribution (IMP::saxs)

LinearFit2D (IMP::algebra)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SpherePatch3D (IMP::algebra)

BackbonePDBSelector (IMP::atom)

DockOrder (IMP.EMageFit.buildxlinks)

LinearLowerBound (IMP::score_functor)

ProteomicsData (IMP::multifit)

SphericalVector3D (IMP::algebra)

BallMover (IMP::core)

DOF (IMP::kinematics)

LinearVelocity (IMP::atom)

ProteomicsEMAlignmentAtomic (IMP::multifit)

SpiderHeader (IMP::em)

BallMover (IMP::symmetry)

DOFsSampler (IMP::kinematics)

ListAssignmentContainer (IMP::domino)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

SpiderImageReaderWriter (IMP::em2d)

BerendsenThermostatOptimizerState (IMP::atom)

Domain (IMP::atom)

ListAssignmentsTable (IMP::domino)

PymolWriter (IMP::display)

SpiderMapReaderWriter (IMP::em)

BinormalTerm (IMP::modeller)

DominoModel (IMP.EMageFit.domino_model)

ListPairContainer (IMP::container)

PythonDirectedGraph (IMP)

State (IMP::atom)

BiStableDistanceRestraint (IMP.pmi.restraints.basic)

DominoSampler (IMP::domino)

ListQuadContainer (IMP::container)

PythonExampleConstraint (IMP.example)

State (IMP.pmi.topology)

BivariateFunction (IMP::isd)

Dope (IMP::score_functor)

ListSingletonContainer (IMP::container)

PythonExamplePairScore (IMP.example)

StateAdaptor (IMP::misc)

Bond (IMP::atom)

DopePairScore (IMP::atom)

ListSubsetFilterTable (IMP::domino)

PythonExampleRestraint (IMP.example)

Statistical (IMP::score_functor)

ForceFieldParameters::Bond (IMP::atom)

DummyRestraint (IMP::em2d)

ListTripletContainer (IMP::container)

PythonExampleSingletonModifier (IMP.example)

StatisticalPairScore (IMP::core)

BondAngleRevoluteJoint (IMP::kinematics)

DummyRestraint (IMP::multifit)

LoadLink (IMP::rmf)

PythonExampleUnaryFunction (IMP.example)

Statistics (IMP.isd.Statistics)

Bonded (IMP::atom)

DynamicListPairContainer (IMP::container)

LocalPlanner (IMP::kinematics)

Q

SteepestDescent (IMP::core)

BondedPairFilter (IMP::atom)

DynamicListQuadContainer (IMP::container)

LocalSlave (IMP.parallel)

StereochemistryPairFilter (IMP::atom)

BondEndpointsRefiner (IMP::atom)

DynamicListSingletonContainer (IMP::container)

LogEmbeddingD (IMP::algebra)

QuadConstraint (IMP::core)

StructureSource (IMP::atom)

BondGeometry (IMP::atom)

DynamicListTripletContainer (IMP::container)

LogHolder (IMP.isd.demux_trajs)

QuadContainer (IMP)

Subsequence (IMP.pmi.io)

BondGraph (IMP::atom)

DynamicNearestNeighbor3D (IMP::algebra)

LognormalAmbiguousRestraint (IMP::isd)

QuadContainerAdaptor (IMP)

SubsequenceData (IMP.pmi.io)

BondPairContainer (IMP::atom)

E

LognormalRestraint (IMP::isd)

QuadContainerSet (IMP::container)

Subset (IMP::domino)

BondsGeometry (IMP::atom)

LogPairScore (IMP::misc)

QuadContainerStatistics (IMP::container)

SubsetFilter (IMP::domino)

BondSingletonScore (IMP::atom)

EdgePairGeometry (IMP::core)

LogWrapper (IMP::isd)

QuadModifier (IMP)

SubsetFilterTable (IMP::domino)

BoundedGridRangeD (IMP::algebra)

EdgePairsGeometry (IMP::core)

LowestRefinedPairScore (IMP::misc)

QuadPredicate (IMP)

SurfaceMeshGeometry (IMP::display)

BoundingBoxD (IMP::algebra)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LRUCache (IMP)

QuadraticClosePairsFinder (IMP::core)

SurfaceShellDensityMap (IMP::em)

BoundingBoxGeometry (IMP::display)

ElementTable (IMP::atom)

M

QuadRestraint (IMP::core)

Switching (IMP::isd)

BoxSweepClosePairsFinder (IMP::core)

Ellipsoid3D (IMP::algebra)

QuadsConstraint (IMP::container)

Symmetric (IMP::pmi)

BranchAndBoundAssignmentsTable (IMP::domino)

EllipsoidGeometry (IMP::display)

Manager (IMP.parallel)

QuadScore (IMP)

System (IMP.pmi.topology)

BranchAndBoundSampler (IMP::domino)

Em2DRestraint (IMP::em2d)

MapDistanceTransform (IMP::em)

QuadsOptimizerState (IMP::container)

SystemBase (IMP.pmi.topology)

BrownianDynamics (IMP::atom)

Em2DRestraintParameters (IMP::em2d)

MapReaderWriter (IMP::em)

QuadsRestraint (IMP::container)

T

BrownianDynamicsTAMD (IMP::atom)

EM2DScore (IMP::em2d)

MarginalHBondRestraint (IMP::isd)

QuasiNewton (IMP::gsl)

BuildModel (IMP.pmi.macros)

Embedding (IMP::statistics)

MarginalNOERestraint (IMP::isd)

R

TableRefiner (IMP::core)

BuildModel1 (IMP.pmi.macros)

EMReaderWriter (IMP::em)

MasksManager (IMP::em2d)

TALOSReader (IMP.isd.TALOSReader)

C

Ensemble (IMP::multifit)

Mass (IMP::atom)

RadialDistributionFunction (IMP::saxs)

TALOSRestraint (IMP::isd)

EnsembleGenerator (IMP::multi_state)

MasterCommunicator (IMP.parallel.master_communicator)

RadiusDependentDistanceMask (IMP::em)

TAMDCentroid (IMP::atom)

CAAngleRestraint (IMP::atom)

Entry (IMP.isd.Entry)

MatchTemplateResult (IMP::em2d)

RadiusDependentKernelParameters (IMP::em)

TAMDParticle (IMP::atom)

CADihedralRestraint (IMP::atom)

EnvelopeFitRestraint (IMP::em)

MaxVectorKDMetric (IMP::algebra)

RadiusOfGyrationRestraint (IMP::multifit)

TempDir (IMP.test)

CAlphaPDBSelector (IMP::atom)

EnvelopePenetrationRestraint (IMP::em)

MCCGSampler (IMP::core)

RadiusOfGyrationRestraint (IMP::saxs)

TestCase (IMP.test)

CappedAssignmentContainer (IMP::domino)

EnvelopeScore (IMP::em)

MeanAbsoluteDifference (IMP::em2d)

RAII (IMP)

TextInput (IMP)

CBetaPDBSelector (IMP::atom)

EqualitySubsetFilterTable (IMP::domino)

Memoizer (IMP)

RangeViewAssignmentContainer (IMP::domino)

TextOutput (IMP)

CenteredMat (IMP::em2d)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MergeTreeBuilder (IMP::multifit)

RatioVolatilityScore (IMP::saxs)

TextWriter (IMP::display)

CenterOfMass (IMP::atom)

EquivalenceSubsetFilterTable (IMP::domino)

Metric (IMP::statistics)

ReadAssignmentContainer (IMP::domino)

TIFFImageReaderWriter (IMP::em2d)

Centroid (IMP::core)

Error (IMP.parallel)

MetricClosePairsFinder (IMP::misc)

ReadHDF5AssignmentContainer (IMP::domino)

Timer (IMP)

CentroidOfRefined (IMP::core)

EuclideanMetric (IMP::statistics)

MinimumPairRestraint (IMP::container)

RecursiveAssignmentsTable (IMP::domino)

TopologyPlot (IMP.pmi.plotting.topology)

Chain (IMP::atom)

EuclideanVectorKDMetric (IMP::algebra)

MinimumPairScore (IMP::container)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

TopologyReader (IMP.pmi.topology)

ChainPDBSelector (IMP::atom)

EvaluationState (IMP)

MinimumQuadRestraint (IMP::container)

RecursivePartitionalClusteringMetric (IMP::statistics)

Transform (IMP::core)

Charged (IMP::atom)

EventException (IMP)

MinimumQuadScore (IMP::container)

RecursiveStates (IMP::domino)

Transformation2D (IMP::algebra)

CHARMMAtom (IMP::atom)

EventPairsOptimizerState (IMP::container)

MinimumRestraint (IMP::core)

RefCountChecker (IMP.test)

Transformation3D (IMP::algebra)

CHARMMAtomTopology (IMP::atom)

EventQuadsOptimizerState (IMP::container)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

Reference (IMP::core)

Transformation3DToText (IMP.EMageFit.imp_general.io)

CHARMMBondEndpoint (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

MinimumSingletonRestraint (IMP::container)

ReferenceFrame3D (IMP::algebra)

TransformationAndReflectionSymmetry (IMP::core)

CHARMMBondParameters (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MinimumSingletonScore (IMP::container)

ReferenceFrameGeometry (IMP::display)

TransformationJoint (IMP::kinematics)

CHARMMConnection (IMP::atom)

ExampleComplexRestraint (IMP::example)

MinimumTripletRestraint (IMP::container)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TransformationSymmetry (IMP::core)

CHARMMDihedralParameters (IMP::atom)

ExampleConstraint (IMP::example)

MinimumTripletScore (IMP::container)

RefinedPairsPairScore (IMP::core)

TransformedDistancePairScore (IMP::core)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

ExampleDecorator (IMP::example)

Model (IMP)

Refiner (IMP)

TransformMover (IMP::pmi)

CharmmForceFieldRestraint (IMP.pmi.restraints_new.stereochemistry)

ExampleObject (IMP::example)

ModelException (IMP)

Reflection3D (IMP::algebra)

Triangle3D (IMP::algebra)

CHARMMIdealResidueTopology (IMP::atom)

ExamplePairScore (IMP::example)

ModellerRestraints (IMP.modeller)

RegistrationResult (IMP::em2d)

TriangleGeometry (IMP::display)

CHARMMInternalCoordinate (IMP::atom)

ExampleRestraint (IMP::example)

ModelLoader (IMP.modeller)

RelativePositionMover (IMP::em2d)

TripletConstraint (IMP::core)

CHARMMParameters (IMP::atom)

ExampleSingletonModifier (IMP::example)

ModelObject (IMP)

RemoteError (IMP.parallel)

TripletContainer (IMP)

CHARMMPatch (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

ModifierVisitor (IMP::core)

RemoveRigidMotionOptimizerState (IMP::atom)

TripletContainerAdaptor (IMP)

CHARMMResidueTopology (IMP::atom)

ExampleTemplateClassD (IMP::example)

Mol2Selector (IMP::atom)

RemoveTranslationOptimizerState (IMP::atom)

TripletContainerSet (IMP::container)

CHARMMResidueTopologyBase (IMP::atom)

ExampleUnaryFunction (IMP::example)

MolCnSymmAxisDetector (IMP::cnmultifit)

ReplicaExchange (IMP.pmi.samplers)

TripletContainerStatistics (IMP::container)

CHARMMSegmentTopology (IMP::atom)

Exception (IMP)

MolecularDynamics (IMP::atom)

ReplicaExchange (IMP::mpi)

TripletModifier (IMP)

CHARMMStereochemistryRestraint (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

MolecularDynamics (IMP.pmi.samplers)

ReplicaExchange0 (IMP.pmi.macros)

TripletPredicate (IMP)

CHARMMTopology (IMP::atom)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

MolecularDynamics (IMP::isd)

Representation (IMP.pmi.representation)

TripletRestraint (IMP::core)

ChecksScoreState (IMP::core)

ExclusionSubsetFilterTable (IMP::domino)

MolecularDynamicsMover (IMP::isd)

Representation (IMP::atom)

TripletsConstraint (IMP::container)

ChiFreeScore (IMP::saxs)

ExclusiveConsecutivePairContainer (IMP::container)

Molecule (IMP::atom)

RepulsiveDistancePairScore (IMP::isd)

TripletScore (IMP)

ChildrenRefiner (IMP::core)

ExclusiveConsecutivePairFilter (IMP::container)

Molecule (IMP.pmi.topology)

Residue (IMP::atom)

TripletsOptimizerState (IMP::container)

ChimeraWriter (IMP::display)

ExtendedGridIndexD (IMP::algebra)

MonteCarlo (IMP.pmi.samplers)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

TripletsRestraint (IMP::container)

ChiScore (IMP::saxs)

EzRestraint (IMP::atom)

MonteCarlo (IMP::core)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

TruncatedHarmonic (IMP::core)

ChiScoreLog (IMP::saxs)

F

MonteCarloMover (IMP::core)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

Typed (IMP::core)

ChiSquaredScore (IMP::em2d)

MonteCarloMoverResult (IMP::core)

ResidueRotamer (IMP::rotamer)

TypedPairScore (IMP::core)

ChiSquareMetric (IMP::statistics)

FFTFitting (IMP::multifit)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

ResidueType (IMP::atom)

TypeException (IMP)

CloseBipartitePairContainer (IMP::container)

FFTFittingOutput (IMP::multifit)

MonteCarloWithBasinHopping (IMP::core)

Resolution (IMP::pmi)

U

ClosedCubicSpline (IMP::core)

FilterGeometry (IMP::display)

MonteCarloWithLocalOptimization (IMP::core)

Restraint (IMP::saxs)

ClosePairContainer (IMP::container)

FilterOperator (IMP.pmi.io.crosslink)

MoveStatisticsScoreState (IMP::core)

Restraint (IMP)

UnaryFunction (IMP)

ClosePairsFinder (IMP::core)

Fine2DRegistrationRestraint (IMP::em2d)

MRCReaderWriter (IMP::em)

RestraintCache (IMP::domino)

UnaryFunctionEvaluate (IMP::score_functor)

ClosePairsPairScore (IMP::core)

FitParameters (IMP::saxs)

MSConnectivityRestraint (IMP::core)

RestraintGeometry (IMP::display)

UnboundedGridRangeD (IMP::algebra)

Clustering (IMP.pmi.analysis)

FitRestraint (IMP::em)

MultipleBinormalRestraint (IMP::modeller)

RestraintsAdaptor (IMP)

Uncertainty (IMP::pmi)

ClusterSet (IMP::em2d)

FittingSolutionRecord (IMP::multifit)

MultiStateModel (IMP::multi_state)

RestraintScoreSubsetFilterTable (IMP::domino)

UncheckedWeakPointer (IMP)

CnSymmAxisDetector (IMP::cnmultifit)

FittingSolutions (IMP::em)

MultiStateModelScore (IMP::multi_state)

RestraintSet (IMP)

Undecorator (IMP)

CoarseCARestraint (IMP.pmi.restraints_new.stereochemistry)

FittingStates (IMP::multifit)

MultivariateFNormalSufficient (IMP::isd)

RestraintSetGeometry (IMP::display)

UniformBackboneSampler (IMP::kinematics)

CoarseCC (IMP::em)

FixedRefiner (IMP::core)

MyMetric (write_a_metric)

RestraintsScoringFunction (IMP::core)

UniformPrior (IMP::isd)

CoarseCCatIntervals (IMP::em)

FixedXYZ (IMP::algebra)

N

ResultsDB (IMP.EMageFit.solutions_io)

UnivariateFunction (IMP::isd)

CoarseConvolution (IMP::em)

Flag (IMP)

RevoluteJoint (IMP::kinematics)

UnorderedTypePairPredicate (IMP::core)

CoinFlipPairPredicate (IMP::core)

FloatIndex (IMP)

NearestNeighborD (IMP::algebra)

RevoluteJointMover (IMP::kinematics)

UnorderedTypeQuadPredicate (IMP::core)

CoinFlipQuadPredicate (IMP::core)

FNormal (IMP::isd)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodiesImageFitRestraint (IMP::em2d)

UnorderedTypeSingletonPredicate (IMP::core)

CoinFlipSingletonPredicate (IMP::core)

ForceFieldParameters (IMP::atom)

NeighborsTable (IMP::core)

RigidBodiesProfileHandler (IMP::saxs)

UnorderedTypeTripletPredicate (IMP::core)

CoinFlipTripletPredicate (IMP::core)

ForceSwitch (IMP::atom)

NestedRigidBodyStates (IMP::domino)

RigidBody (IMP::core)

UsageException (IMP)

CollisionCrossSection (IMP::em2d)

FormFactorTable (IMP::saxs)

NetworkError (IMP.parallel)

RigidBodyAnglePairScore (IMP::core)

V

Color (IMP::display)

Fragment (IMP::atom)

NOERestraint (IMP::isd)

RigidBodyDerivativeGeometry (IMP::core)

ColorChange (IMP.pmi.tools)

FretData (IMP::isd)

NoMoreSlavesError (IMP.parallel)

RigidBodyDerivativesGeometry (IMP::core)

Value (IMP)

Colored (IMP::display)

FretRestraint (IMP::isd)

NonAlternativePDBSelector (IMP::atom)

RigidBodyDiffusion (IMP::atom)

ValueException (IMP)

CommandDispatcher (IMP)

G

NonCopyable (IMP)

RigidBodyDistancePairScore (IMP::core)

Vector (IMP)

CommonEndpointPairFilter (IMP::misc)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyFrameGeometry (IMP::core)

VectorBaseD (IMP::algebra)

CompareMultiStateModels (IMP::multi_state)

Gaussian (IMP::core)

NonRigidMember (IMP::core)

RigidBodyFramesGeometry (IMP::core)

VectorD (IMP::algebra)

ComplementarityRestraint (IMP::multifit)

Gaussian3D (IMP::algebra)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidBodyHierarchyGeometry (IMP::core)

VectorDEmbedding (IMP::statistics)

CompleteLinkage (IMP::em2d)

GaussianEMRestraint (IMP::isd)

NonWaterPDBSelector (IMP::atom)

RigidBodyMember (IMP::core)

VectorKDMetric (IMP::algebra)

ComponentHeader (IMP::multifit)

GaussianProcessInterpolation (IMP::isd)

NormalizedSphereDistancePairScore (IMP::core)

RigidBodyMover (IMP::symmetry)

VelocityScalingOptimizerState (IMP::atom)

ComponentTopology (IMP.pmi.topology)

GaussianProcessInterpolationRestraint (IMP::isd)

NormalMover (IMP::core)

RigidBodyMover (IMP::core)

VersionInfo (IMP)

CompositeJoint (IMP::kinematics)

GaussianRestraint (IMP::isd)

NotPDBSelector (IMP::atom)

RigidBodyStates (IMP::domino)

VolumeRestraint (IMP::core)

CompositeRestraint (IMP.pmi.restraints.proteomics)

GeneralizedGuinierPorodFunction (IMP::isd)

NPDBSelector (IMP::atom)

RigidBodyTorque (IMP::core)

Voxel (IMP::em)

CompositeRestraint (IMP::pmi)

GenericAttributeSingletonScore (IMP::core)

Nuisance (IMP::isd)

RigidBodyTunneler (IMP::core)

W

CompoundStates (IMP::domino)

GenericBoundingBox3DSingletonScore (IMP::core)

O

RigidBodyUmbrella (IMP::core)

Cone3D (IMP::algebra)

GenericDistanceToSingletonScore (IMP::core)

RigidClosePairsFinder (IMP::core)

WarningContext (IMP)

Configuration (IMP)

GeometricHash (IMP::multifit)

Object (IMP)

RigidMember (IMP::core)

WaterPDBSelector (IMP::atom)

ConfigurationSet (IMP)

GeometricPrimitiveD (IMP::algebra)

OpenCubicSpline (IMP::core)

RotamerAngleTuple (IMP::rotamer)

WeakPointer (IMP)

ConfigurationSetRMSDMetric (IMP::statistics)

Geometry (IMP::display)

OpenCubicSpline (IMP::score_functor)

RotamerCalculator (IMP::rotamer)

Weight (IMP::isd)

ConfigurationSetXYZEmbedding (IMP::statistics)

GeometryProcessor (IMP::display)

Optimizer (IMP)

RotamerLibrary (IMP::rotamer)

WeightedDerivativesToRefined (IMP::core)

ConjugateGradients (IMP.pmi.samplers)

GeometrySet (IMP::display)

OptimizerState (IMP)

Rotation2D (IMP::algebra)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConjugateGradients (IMP::gsl)

GetModelDensity (IMP.pmi.analysis)

OptionParser (IMP)

Rotation3D (IMP::algebra)

WeightedFitParameters (IMP::saxs)

ConjugateGradients (IMP::core)

GridClosePairsFinder (IMP::core)

Order (IMP::domino)

RRT (IMP::kinematics)

WeightedProfileFitter (IMP::saxs)

ConnectingPairContainer (IMP::container)

GridD (IMP::algebra)

OrderedTypePairPredicate (IMP::core)

RunInTempDir (IMP.test)

WeightedSphereDistancePairScore (IMP::core)

ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking)

GridIndexD (IMP::algebra)

OrderedTypeQuadPredicate (IMP::core)

S

WeightMover (IMP::isd)

ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

GridStates (IMP::em2d)

OrderedTypeSingletonPredicate (IMP::core)

WeightRestraint (IMP::isd)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

GSLOptimizer (IMP::gsl)

OrderedTypeTripletPredicate (IMP::core)

SameResiduePairFilter (IMP::atom)

WeightScore (IMP::score_functor)

ConnectivityRestraint (IMP::core)

H

OrientedSoap (IMP::score_functor)

SampleAssignmentContainer (IMP::domino)

WormLikeChain (IMP::misc)

ConnollySurfacePoint (IMP::algebra)

OrientedSoapPairScore (IMP::atom)

SampledDensityMap (IMP::em)

WriteAssignmentContainer (IMP::domino)

ConsecutivePairContainer (IMP::container)

Harmonic (IMP::core)

OrPDBSelector (IMP::atom)

SampleObjects (IMP.pmi.sampling_tools)

WriteHDF5AssignmentContainer (IMP::domino)

ConsecutivePairFilter (IMP::container)

Harmonic (IMP::score_functor)

Output (IMP.pmi.output)

Sampler (IMP)

WriteOptimizerState (IMP::display)

ConstantPairPredicate (IMP::core)

HarmonicDistancePairScore (IMP::core)

P

SaveLink (IMP::rmf)

WritePDBOptimizerState (IMP::atom)

ConstantQuadPredicate (IMP::core)

HarmonicLowerBound (IMP::core)

SaveOptimizerState (IMP::rmf)

Writer (IMP::display)

ConstantRestraint (IMP::core)

HarmonicLowerBound (IMP::score_functor)

PackedAssignmentContainer (IMP::domino)

SaveToConfigurationSetOptimizerState (IMP)

WriterAdaptor (IMP::display)

ConstantSingletonPredicate (IMP::core)

HarmonicSphereDistancePairScore (IMP::core)

PairConstraint (IMP::core)

SAXSMultiStateModelScore (IMP::multi_state)

WriteRestraintScoresOptimizerState (IMP::core)

ConstantTripletPredicate (IMP::core)

HarmonicUpperBound (IMP::core)

PairContainer (IMP)

Scale (IMP::isd)

X

Constraint (IMP)

HarmonicUpperBound (IMP::score_functor)

PairContainerAdaptor (IMP)

ScopedAddCacheAttribute (IMP)

ConstVector (IMP)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PairContainerSet (IMP::container)

ScopedSetAttribute (IMP)

Xlink (IMP.EMageFit.buildxlinks)

Container (IMP)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PairContainerStatistics (IMP::container)

Score (IMP::score_functor)

XlinksDict (IMP.EMageFit.buildxlinks)

Context (IMP.parallel)

HarmonicWell (IMP::core)

PairGeometry (IMP::display)

ScoreAccumulator (IMP)

XLTable (IMP.pmi.io.xltable)

Copy (IMP::atom)

HasHigherCCC (IMP::em2d)

PairListSubsetFilterTable (IMP::domino)

ScoreFunction (IMP::em2d)

XplorReaderWriter (IMP::em)

Cosine (IMP::core)

HasLowerScore (IMP::em2d)

PairModifier (IMP)

ScoreState (IMP)

XYZ (IMP::core)

CoulombPairScore (IMP::atom)

HeapAssignmentContainer (IMP::domino)

PairPredicate (IMP)

ScoreUnaryFunction (IMP::score_functor)

XYZDerivativeGeometry (IMP::core)

Covariance1DFunction (IMP::isd)

HeapRecord (IMP.EMageFit.solutions_io)

PairRestraint (IMP::core)

ScoringFunction (IMP)

XYZDerivativesGeometry (IMP::core)

Cover (IMP::core)

HierarchiesGeometry (IMP::atom)

PairsConstraint (IMP::container)

ScoringFunctionAdaptor (IMP)

XYZR (IMP::core)

CoverBond (IMP::atom)

Hierarchy (IMP::core)

PairScore (IMP)

SecondaryStructureResidue (IMP::atom)

XYZRGeometry (IMP::core)

CoverRefined (IMP::core)

Hierarchy (IMP::atom)

PairsGeometry (IMP::display)

Segment3D (IMP::algebra)

XYZRsGeometry (IMP::core)

CPDBSelector (IMP::atom)

HierarchyCounter (IMP::core)

PairsOptimizerState (IMP::container)

SegmentationParameters (IMP::em2d)

XYZStates (IMP::domino)

CreateLogContext (IMP)

HierarchyDatabase (IMP.pmi.tools)

PairsRestraint (IMP::container)

SegmentGeometry (IMP::display)

d

CrossLink (IMP.pmi.io)

HierarchyGeometry (IMP::atom)

ParabolicFit2D (IMP::algebra)

Selection (IMP::atom)

CrossLinkData (IMP.pmi.io)

HierarchyLoadLink (IMP::rmf)

Particle (IMP)

SelectionGeometry (IMP::atom)

dof (IMP.pmi.dof)

CrossLinkData (IMP::isd)

HierarchySaveLink (IMP::rmf)

ParticleAdaptor (IMP)

Sequences (IMP.pmi.topology)

p

CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink)

HierarchyTraits (IMP::core)

ParticleEmbedding (IMP::statistics)

SerialMover (IMP::core)

CrossLinkMS (IMP.pmi.nonmantained)

HierarchyVisitor (IMP::core)

ParticleIndexAdaptor (IMP)

SetCheckState (IMP)

piecewise_linear_distribution (IMP)

CrossLinkMSRestraint (IMP::isd)

HighDensityEmbedding (IMP::em)

ParticleIndexesAdaptor (IMP)

SetLogState (IMP)

s

CrossLinkTable (IMP.pmi.analysis)

HistogramD (IMP::statistics)

ParticleIndexPairsAdaptor (IMP)

SetLogTarget (IMP)

CustomXYZR (IMP::misc)

History (IMP.isd.History)

ParticleInputs (IMP)

SetNumberOfThreads (IMP)

sfo_common (IMP.isd.shared_functions)

CvEstimator (IMP.isd.TuneRex)

HybridMonteCarlo (IMP::isd)

ParticleOutputs (IMP)

SettingsData (IMP::multifit)

v

Cylinder3D (IMP::algebra)

HydrogenPDBSelector (IMP::atom)

ParticlesAdaptor (IMP::domino)

SetupRigidBody (IMP.pmi.dof)

CylinderGeometry (IMP::display)

I

ParticlesDummyRestraint (IMP::em2d)

SGEPESlaveArray (IMP.parallel)

vonMises (IMP::isd)

Image (IMP::em2d)

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