IMP.pmi.io.CrossLinkData Class Reference

A class for storing groups of crosslinks. More...

Inherits object.

Detailed Description

A class for storing groups of crosslinks.

Acts like a dictionary where keys are unique IDs and values are CrossLinks Equivalent (using objects instead of dicts) to a data structure like so: data[1030] = [ { 'r1': {'molecule':'A','residue_index':5}, 'r2': {'molecule':'B','residue_index':100}, 'Score': 123 }, { 'r1': {'molecule':'C','residue_index':63}, 'r2': {'molecule':'D','residue_index':94}, 'Score': 600 } ]

Note

This class is only available in Python.

Definition at line 323 of file pmi/io/__init__.py.

Public Member Functions
def	__init__
	Setup a CrossLinkData object. More...
def	add_cross_link
	Add a crosslink. More...

Constructor & Destructor Documentation

def IMP.pmi.io.CrossLinkData.__init__

(

self

)

Setup a CrossLinkData object.

Definition at line 336 of file pmi/io/__init__.py.

Member Function Documentation

def IMP.pmi.io.CrossLinkData.add_cross_link	(		self,
			unique_id,
			kws1,
			kws2,
			score
	)

Add a crosslink.

They are organized by their unique_ids.

Parameters

unique_id	The id is used to group crosslinks that are alternatives
kws1	A dictionary of selection keywords for the first residue
kws2	A dictionary of selection keywards for the second residue
score	A score that might be used later for filtering

Note

The dictionaries can contain any Selection argument like molecule or residue_index

Definition at line 345 of file pmi/io/__init__.py.

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The documentation for this class was generated from the following file:

• pmi/io/__init__.py