IMP.pmi.output Namespace Reference

Classes for writing output files and processing them. More...

Detailed Description

Classes for writing output files and processing them.

Classes
class	Output
	Class for easy writing of PDBs, RMFs, and stat files. More...
class	ProcessOutput
	A class for reading stat files. More...

Functions
def	plot_field_histogram
	Plot a list of histograms from a value list. More...
def	plot_fields_box_plots
	Plot time series as boxplots. More...

Function Documentation

def IMP.pmi.output.plot_field_histogram	(		name,
			values_lists,
			valuename = None,
			bins = 40,
			colors = None,
			format = 'png',
			reference_xline = None,
			yplotrange = None,
			xplotrange = None,
			normalized = True,
			leg_names = None
	)

Plot a list of histograms from a value list.

Parameters

name	the name of the plot
value_lists	the list of list of values eg: [[...],[...],[...]]
valuename	the y-label
bins	the number of bins
colors	If None, will use rainbow. Else will use specific list
format	output format
reference_xline	plot a reference line parallel to the y-axis
yplotrange	the range for the y-axis
normalized	whether the histogram is normalized or not
leg_names	names for the legend

Note

This function is only available in Python.

Definition at line 894 of file output.py.

def IMP.pmi.output.plot_fields_box_plots	(		name,
			values,
			positions,
			frequencies = None,
			valuename = 'None',
			positionname = 'None',
			xlabels = None,
			scale_plot_length = 1.0
	)

Plot time series as boxplots.

fields is a list of time series, positions are the x-values valuename is the y-label, positionname is the x-label

Note

This function is only available in Python.

Definition at line 959 of file output.py.