A class to simplify create of constraints and movers for an IMP Hierarchy. More...

Inherits object.

Detailed Description

A class to simplify create of constraints and movers for an IMP Hierarchy.

Call the various create() functions to get started.

Definition at line 41 of file pmi/dof/__init__.py.

Public Member Functions
def	create_flexible_beads
	Create a chain of flexible beads. More...

def	create_rigid_body
	Create rigid body constraint and mover. More...

def	create_super_rigid_body
	Create SUPER rigid body mover from one or more hierarchies. More...

def	show
	Make it pretty. More...

Member Function Documentation

def IMP.pmi.dof.DegreesOfFreedom.create_flexible_beads	(	self,
		hspec,
		max_trans
	)

Create a chain of flexible beads.

Parameters

hspec	Can be one of the following inputs: IMP Selection, Hierarchy, PMI Molecule, Residue, or a list/set
max_trans	Maximum flexible bead translation

Definition at line 84 of file pmi/dof/__init__.py.

def IMP.pmi.dof.DegreesOfFreedom.create_rigid_body	(	self,
		hspec,
		max_trans = `1.0`,
		max_rot = `0.1`
	)

Create rigid body constraint and mover.

Parameters

hspec	Can be one of the following inputs: IMP Selection, Hierarchy, PMI Molecule, Residue, or a list/set
max_trans	Maximum rigid body translation
max_rot	Maximum rigid body rotation

Definition at line 48 of file pmi/dof/__init__.py.

def IMP.pmi.dof.DegreesOfFreedom.create_super_rigid_body	(	self,
		hspec,
		max_trans = `1.0`,
		max_rot = `0.1`,
		chain_min_length = `None`,
		chain_max_length = `None`
	)

Create SUPER rigid body mover from one or more hierarchies.

Can also create chain of SRBs.

Parameters

hspec	Can be one of the following inputs: IMP Selection, Hierarchy, PMI Molecule, Residue, or a list/set
max_trans	Maximum super rigid body translation
max_rot	Maximum super rigid body rotation
chain_min_length	Create a CHAIN of super rigid bodies - must provide list This parameter is the minimum chain length.
chain_max_length	max chain length

Definition at line 63 of file pmi/dof/__init__.py.

def IMP.pmi.dof.DegreesOfFreedom.show ( self )

Make it pretty.

Definition at line 99 of file pmi/dof/__init__.py.

The documentation for this class was generated from the following file: