Detailed Description

Cover a bond with a sphere.

This is a version of core::CoverRefined optimized for bonds. It is about 4x faster than the general purpose one.

Definition at line 24 of file CoverBond.h.

Public Member Functions
virtual void	apply_index (Model *m, ParticleIndex p) const

virtual void	apply_indexes (Model *m, const ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const

virtual ModelObjectsTemp	do_get_inputs (Model *m, const ParticleIndexes &pis) const

virtual ModelObjectsTemp	do_get_outputs (Model *m, const ParticleIndexes &pis) const

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::SingletonModifier
	SingletonModifier (std::string name="SingletonModifier %1%")

virtual void	apply (Particle *vt) const

Public Member Functions inherited from IMP::ParticleInputs
ModelObjectsTemp	get_inputs (Model *m, const ParticleIndexes &pis) const

Public Member Functions inherited from IMP::ParticleOutputs
ModelObjectsTemp	get_outputs (Model *m, const ParticleIndexes &pis) const

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Public Types inherited from IMP::SingletonModifier
typedef Particle *	Argument

typedef ParticleIndex	IndexArgument

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Member Function Documentation

virtual void IMP::atom::CoverBond::apply_index	(	Model *	m,
		ParticleIndex	v
	)		const

virtual

Apply the function to a single value

virtual void IMP::atom::CoverBond::apply_indexes	(	Model *	m,
		const ParticleIndexes &	o,
		unsigned int	lower_bound,
		unsigned int	upper_bound
	)		const

virtual

Apply the function to a collection of ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.

Definition at line 34 of file CoverBond.h.

virtual ModelObjectsTemp IMP::atom::CoverBond::do_get_inputs	(	Model *	m,
		const ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the inputs.

virtual ModelObjectsTemp IMP::atom::CoverBond::do_get_outputs	(	Model *	m,
		const ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the outputs.

virtual ::IMP::VersionInfo IMP::atom::CoverBond::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 35 of file CoverBond.h.

The documentation for this class was generated from the following file: