IMP.EMageFit.solutions_io Namespace Reference

Utility functions to store and retrieve solution information. More...

Detailed Description

Utility functions to store and retrieve solution information.

Classes
class	HeapRecord
	The heapq algorithm is a min-heap. More...
class	ResultsDB
	Class for managing the results of the experiments. More...

Functions
def	gather_best_solution_results
	Reads a set of database files and merge them into a single file. More...
def	gather_solution_results
	Reads a set of database files and puts them in a single file Makes sure to reorder all column names if neccesary before merging. More...
def	get_best_solution
	Recover the reference frame of the n-th best solution from a database. More...
def	get_fields_string
	Get a list of fields and return a string with them. More...
def	get_sorting_indices
	Return indices that sort the list l. More...

Function Documentation

def IMP.EMageFit.solutions_io.gather_best_solution_results	(		fns,
			fn_output,
			max_number = 50000,
			raisef = 0.1,
			orderby = 'em2d'
	)

Reads a set of database files and merge them into a single file.

Parameters

fns	List of files with databases
fn_output	The database to create
max_number	Maximum number of records to keep, sorted according to orderby
raisef	Ratio of problematic database files tolerated before raising an error. This option is to tolerate some files of the databases being broken because the cluster fails, fill the disks, etc
orderby	Criterium used to sort the the records NOTE: Makes sure to reorder all column names if neccesary before merging The record for the native solution is only added once (from first file).

Note

This function is only available in Python.

Definition at line 69 of file solutions_io.py.

def IMP.EMageFit.solutions_io.gather_solution_results	(		fns,
			fn_output,
			raisef = 0.1
	)

Reads a set of database files and puts them in a single file Makes sure to reorder all column names if neccesary before merging.

Parameters

fns	List of database files
fn_output	Name of the output database
raisef	See help for gather_best_solution_results()

Note

This function is only available in Python.

Definition at line 150 of file solutions_io.py.

def IMP.EMageFit.solutions_io.get_best_solution	(		fn_database,
			Nth,
			fields = False,
			orderby = False,
			tbl = 'results'
	)

Recover the reference frame of the n-th best solution from a database.

The index Nth stars at 0

Note

This function is only available in Python.

Definition at line 202 of file solutions_io.py.

def IMP.EMageFit.solutions_io.get_fields_string

(

fields

)

Get a list of fields and return a string with them.

If there are no fields, return an *, indicating SQL that all the fields are requested

Parameters

fields

A list of strings

Returns

a string

Note

This function is only available in Python.

Definition at line 226 of file solutions_io.py.

def IMP.EMageFit.solutions_io.get_sorting_indices

(

l

)

Return indices that sort the list l.

Note

This function is only available in Python.

Definition at line 195 of file solutions_io.py.