IMP.pmi.topology.State Class Reference

This private class is constructed from within the System class. More...

Inheritance diagram for IMP.pmi.topology.State:

Detailed Description

This private class is constructed from within the System class.

It wraps an IMP.atom.State

Note

This class is only available in Python.

Definition at line 139 of file pmi/topology/__init__.py.

Public Member Functions
def	__init__
	Define a new state. More...
def	build
	call build on all molecules (automatically makes clones) More...
def	create_molecule
	Create a new Molecule within this State. More...
Public Member Functions inherited from IMP.pmi.topology.SystemBase
def	build
	Build the coordinates of the system. More...

Constructor & Destructor Documentation

def IMP.pmi.topology.State.__init__	(		self,
			system,
			state_index
	)

Define a new state.

Parameters

system	the PMI System
state_index	the index of the new state

Definition at line 143 of file pmi/topology/__init__.py.

Member Function Documentation

def IMP.pmi.topology.State.build	(		self,
			kwargs
	)

call build on all molecules (automatically makes clones)

Definition at line 186 of file pmi/topology/__init__.py.

def IMP.pmi.topology.State.create_molecule	(		self,
			name,
			sequence = None,
			chain_id = ''
	)

Create a new Molecule within this State.

Parameters

name	the name of the molecule (string) it must not be already used
sequence	sequence (string)
chain_id	Chain id to assign to this molecule

Definition at line 159 of file pmi/topology/__init__.py.

---

The documentation for this class was generated from the following file:

• pmi/topology/__init__.py