IMP Reference Guide
2.5.0
The Integrative Modeling Platform
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This private class is constructed from within the System class. More...
This private class is constructed from within the System class.
It wraps an IMP.atom.State
Definition at line 139 of file pmi/topology/__init__.py.
Public Member Functions | |
def | __init__ |
Define a new state. More... | |
def | build |
call build on all molecules (automatically makes clones) More... | |
def | create_molecule |
Create a new Molecule within this State. More... | |
Public Member Functions inherited from IMP.pmi.topology.SystemBase | |
def | build |
Build the coordinates of the system. More... | |
def IMP.pmi.topology.State.__init__ | ( | self, | |
system, | |||
state_index | |||
) |
Define a new state.
system | the PMI System |
state_index | the index of the new state |
Definition at line 143 of file pmi/topology/__init__.py.
def IMP.pmi.topology.State.build | ( | self, | |
kwargs | |||
) |
call build on all molecules (automatically makes clones)
Definition at line 186 of file pmi/topology/__init__.py.
def IMP.pmi.topology.State.create_molecule | ( | self, | |
name, | |||
sequence = None , |
|||
chain_id = '' |
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) |
Create a new Molecule within this State.
name | the name of the molecule (string) it must not be already used |
sequence | sequence (string) |
chain_id | Chain id to assign to this molecule |
Definition at line 159 of file pmi/topology/__init__.py.