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IMP Reference Guide
2.5.0
The Integrative Modeling Platform
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Store a ParticleIndexPairs. More...
#include <IMP/container/DynamicListPairContainer.h>
Inheritance diagram for IMP::container::DynamicListPairContainer:Store a ParticleIndexPairs.
In contrast to ListPairContainer, this list is designed to act as the output of a ScoreState or another container. The key difference is that it uses the passed Container to define the list of all possible contents of the container.
Definition at line 27 of file DynamicListPairContainer.h.
Public Member Functions | |
| DynamicListPairContainer (Container *scope, std::string name="ListPairContainer %1%") | |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::PairContainer | |
| void | apply (const PairModifier *sm) const |
| Apply a SingletonModifier to the contents. More... | |
| void | apply_generic (const PairModifier *m) const |
| Just use apply() in the base class. More... | |
| const ParticleIndexPairs & | get_contents () const |
| virtual ParticleIndexPairs | get_indexes () const =0 |
| ParticlePair | get_particle_pair (unsigned int i) const |
| ParticlePairsTemp | get_particle_pairs () const |
| virtual ParticleIndexPairs | get_range_indexes () const =0 |
| Public Member Functions inherited from IMP::Container | |
| ModelObjectsTemp | do_get_outputs () const |
| containers don't have outputs More... | |
| virtual ParticleIndexes | get_all_possible_indexes () const =0 |
| Get contained particles. More... | |
| std::size_t | get_contents_hash () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Methods to control the contained objects | |
This container stores a list of Pair objects. To manipulate the list use these methods. | |
| void | add (const ParticleIndexPair &vt) |
| Add a single const ParticleIndexPair& to the container. More... | |
| void | add (const ParticleIndexPairs &c) |
| Add ParticleIndexPairs to the container. More... | |
| void | set (ParticleIndexPairs cp) |
| Set the contents of the container to the given ParticleIndexPairs. More... | |
| void | clear () |
| Clear the contents of the container. More... | |
| void | add_particle_pair (const ParticlePair &vt) |
| void | add_particle_pairs (const ParticlePairsTemp &c) |
| void | set_particle_pairs (ParticlePairsTemp c) |
| void | clear_particle_pairs () |
Additional Inherited Members | |
| Public Types inherited from IMP::PairContainer | |
| typedef ParticleIndexPair | ContainedIndexType |
| typedef ParticleIndexPairs | ContainedIndexTypes |
| typedef ParticlePair | ContainedType |
| typedef ParticlePairsTemp | ContainedTypes |
| typedef PairModifier | Modifier |
| typedef const ParticleIndexPair & | PassContainedIndexType |
| Protected Member Functions inherited from IMP::PairContainer | |
| PairContainer (Model *m, std::string name="PairContainer %1%") | |
| virtual void | do_apply (const PairModifier *sm) const =0 |
| virtual bool | do_get_provides_access () const |
| Protected Member Functions inherited from IMP::Container | |
| Container (Model *m, std::string name="Container %1%") | |
| virtual std::size_t | do_get_contents_hash () const =0 |
| Protected Member Functions inherited from IMP::ModelObject | |
| virtual ModelObjectsTemp | do_get_inputs () const =0 |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::container::DynamicListPairContainer::DynamicListPairContainer | ( | Container * | scope, |
| std::string | name = "ListPairContainer %1%" |
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| ) |
Constructs the dynamic list
| scope | a container with a list of all possible particles that are allowed to be dynamically added or removed in this container |
| name | the name of this container |
| void IMP::container::DynamicListPairContainer::add | ( | const ParticleIndexPair & | vt | ) |
Add a single const ParticleIndexPair& to the container.
| void IMP::container::DynamicListPairContainer::add | ( | const ParticleIndexPairs & | c | ) |
Add ParticleIndexPairs to the container.
| void IMP::container::DynamicListPairContainer::add_particle_pair | ( | const ParticlePair & | vt | ) |
| void IMP::container::DynamicListPairContainer::add_particle_pairs | ( | const ParticlePairsTemp & | c | ) |
| void IMP::container::DynamicListPairContainer::clear | ( | ) |
Clear the contents of the container.
| void IMP::container::DynamicListPairContainer::clear_particle_pairs | ( | ) |
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virtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 90 of file DynamicListPairContainer.h.
| void IMP::container::DynamicListPairContainer::set | ( | ParticleIndexPairs | cp | ) |
Set the contents of the container to the given ParticleIndexPairs.
| void IMP::container::DynamicListPairContainer::set_particle_pairs | ( | ParticlePairsTemp | c | ) |