Detailed Description

Removes rigid translation from the particles.

Recenters the bunch of particles by putting the very first particle at the origin and rigidly translating all the others.

Definition at line 23 of file RemoveTranslationOptimizerState.h.

Public Member Functions
	RemoveTranslationOptimizerState (Model *m, ParticleIndexesAdaptor pis)

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	remove_translation () const
	Remove translation now. More...

void	set_particles (const Particles &pis)
	Set the particles to use. More...

Public Member Functions inherited from IMP::OptimizerState
	OptimizerState (Model *m, std::string name)

unsigned int	get_number_of_updates () const
	Return the number of times update has been called. More...

Optimizer *	get_optimizer () const

unsigned int	get_period () const

virtual void	reset ()

virtual void	set_is_optimizing (bool)

void	set_number_of_updates (unsigned int n)
	Set the counter. More...

void	set_period (unsigned int p)

virtual void	update ()
	Called when the Optimizer accepts a new conformation. More...

void	update_always ()

Public Member Functions inherited from IMP::ModelObject
	ModelObject (Model *m, std::string name)

bool	get_has_dependencies () const
	Return whether this object has dependencies computed. More...

bool	get_has_required_score_states () const
	Return whether score states are computed. More...

ModelObjectsTemp	get_inputs () const

ModelObjectsTemps	get_interactions () const
	Get the interacting sets induced by this ModelObject. More...

Model *	get_model () const

ModelObjectsTemp	get_outputs () const

const ScoreStatesTemp &	get_required_score_states () const
	Get the score states that are ancestors of this in the dependency graph. More...

void	set_has_dependencies (bool tf)
	Either invalidate the dependencies or ensure they are correct. More...

void	set_has_required_score_states (bool tf)
	Compute the required score states. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Protected Member Functions
virtual void	do_update (unsigned int call)

Protected Member Functions inherited from IMP::OptimizerState
virtual ModelObjectsTemp	do_get_inputs () const

virtual ModelObjectsTemp	do_get_outputs () const

virtual void	do_set_is_optimizing (bool)

Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemps	do_get_interactions () const

virtual void	handle_set_has_required_score_states (bool)

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Member Function Documentation

virtual void IMP::atom::RemoveTranslationOptimizerState::do_update ( unsigned int )

protectedvirtual

This method is called every get_period() update calls. The number of times this method has been called since the last reset or start of the optimization run is passed.

Reimplemented from IMP::OptimizerState.

virtual ::IMP::VersionInfo IMP::atom::RemoveTranslationOptimizerState::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 34 of file RemoveTranslationOptimizerState.h.

void IMP::atom::RemoveTranslationOptimizerState::remove_translation ( ) const

Remove translation now.

void IMP::atom::RemoveTranslationOptimizerState::set_particles ( const Particles & pis )

Set the particles to use.

Definition at line 29 of file RemoveTranslationOptimizerState.h.

The documentation for this class was generated from the following file:

RemoveTranslationOptimizerState.h

Detailed Description

Public Member Functions

Protected Member Functions

Member Function Documentation