IMP.pmi.io.SubsequenceData Class Reference

Group a bunch of subsequences with certain labels Use cases: storing lists of secondary structures from DSSP or PSIPRED storing lists of molecules that should be made symmetric. More...

Inherits object.

Detailed Description

Group a bunch of subsequences with certain labels Use cases: storing lists of secondary structures from DSSP or PSIPRED storing lists of molecules that should be made symmetric.

Note

This class is only available in Python.

Definition at line 236 of file pmi/io/__init__.py.

Public Member Functions
def	__init__
	Setup groups of subsequences. More...
def	add_subsequence
	Append a new cross-link to a given unique ID. More...

Constructor & Destructor Documentation

def IMP.pmi.io.SubsequenceData.__init__

(

self

)

Setup groups of subsequences.

Definition at line 241 of file pmi/io/__init__.py.

Member Function Documentation

def IMP.pmi.io.SubsequenceData.add_subsequence	(		self,
			label,
			subsequence
	)

Append a new cross-link to a given unique ID.

Parameters

label	label for this subsequence (e.g., 'helix')
subsequence	a Subsequence object to store under that label e.g. Subsequence(chain='A',residue_tuple=(10,15))

Definition at line 247 of file pmi/io/__init__.py.

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The documentation for this class was generated from the following file:

• pmi/io/__init__.py