IMP  2.1.1
The Integrative Modeling Platform
Class Index
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X
  A  
DensityFillingRestraint (IMP::em)   InBoundingBox3DSingletonPredicate (IMP::core)   ParticleIndexesAdaptor (IMP::kernel)   SGEPESlaveArray (IMP.parallel)   
DensityHeader (IMP::em)   InContainerPairFilter (IMP::container)   ParticleIndexPairsAdaptor (IMP::kernel)   SGEQsubSlaveArray (IMP.parallel)   
AddBoolFlag (IMP::base)   DensityMap (IMP::em)   InContainerQuadFilter (IMP::container)   ParticleInputs (IMP::kernel)   Shift (IMP::score_functor)   
AddFloatFlag (IMP::base)   DependencyScoreState (IMP::domino)   InContainerSingletonFilter (IMP::container)   ParticleOutputs (IMP::kernel)   Showable (IMP::base)   
AddIntFlag (IMP::base)   DerivativeAccumulator (IMP::kernel)   InContainerTripletFilter (IMP::container)   ParticlesAdaptor (IMP::domino)   SimpleAssignmentsTable (IMP::domino)   
AddScores (IMP::score_functor)   DerivativeCalculator (IMP::saxs)   IncrementalScoringFunction (IMP::core)   ParticlesDummyRestraint (IMP::em2d)   SimpleConnectivity (IMP::restrainer)   
AddStringFlag (IMP::base)   DerivativesFromRefined (IMP::core)   Index (IMP::base)   ParticleStates (IMP::domino)   SimpleDiameter (IMP::restrainer)   
AlignmentClustering (IMP.multifit.cluster)   DerivativesToRefined (IMP::core)   IndexException (IMP::base)   ParticleStatesTable (IMP::domino)   SimpleDistance (IMP::restrainer)   
AlignSymmetric (IMP::cnmultifit)   DiameterRestraint (IMP::core)   IndexStates (IMP::domino)   PartitionalClustering (IMP::statistics)   SimpleEMFit (IMP::restrainer)   
AllBipartitePairContainer (IMP::container)   Diffusion (IMP::atom)   IndexVector (IMP::base)   PartitionalClusteringWithCenter (IMP::statistics)   SimpleExcludedVolume (IMP::restrainer)   
AllMol2Selector (IMP::atom)   Dihedral (IMP::atom)   InitialDockingFromXlinks (IMP.em2d.buildxlinks)   PathLocalPlanner (IMP::kinematics)   SimpleLoadLink (IMP::rmf)   
AllPairContainer (IMP::container)   DihedralAngleRevoluteJoint (IMP::kinematics)   InputAdaptor (IMP::base)   PCAAligner (IMP::em)   SimpleSaveLink (IMP::rmf)   
AllPDBSelector (IMP::atom)   DihedralRestraint (IMP::core)   InternalException (IMP::base)   PCAFitRestraint (IMP::em)   Simplex (IMP::gsl)   
AllSamePairPredicate (IMP::core)   DihedralSingletonScore (IMP::atom)   IOException (IMP::base)   PDBSelector (IMP::atom)   Simulator (IMP::atom)   
AllSameQuadPredicate (IMP::core)   DirectorObjectChecker (IMP.test)   IsCollisionPairPredicate (IMP::core)   PermutationStates (IMP::domino)   SingletonConstraint (IMP::core)   
AllSameSingletonPredicate (IMP::core)   DiscreteSampler (IMP::domino)   IsosurfaceGeometry (IMP::display)   piecewise_linear_distribution (IMP::base)   SingletonContainer (IMP::kernel)   
AllSameTripletPredicate (IMP::core)   DisjointSetsSubsetFilterTable (IMP::domino)   
  J  
Pipe (IMP.isd.utils)   SingletonContainerAdaptor (IMP::kernel)   
AmbiguousNOERestraint (IMP::isd)   Display (IMP.restrainer)   PivyWriter (IMP::display)   SingletonContainerSet (IMP::container)   
AmbiguousRestraint (IMP::isd)   DistanceFilter (IMP::em2d)   JeffreysRestraint (IMP::isd)   Plane3D (IMP::algebra)   SingletonContainerStatistics (IMP::container)   
Analysis (IMP.isd.Analysis)   DistanceFilterTable (IMP::em2d)   Joint (IMP::kinematics)   PlaneGeometry (IMP::display)   SingletonGeometry (IMP::display)   
AnchorsData (IMP::multifit)   DistanceMask (IMP::em)   JPGImageReaderWriter (IMP::em2d)   Pointer (IMP::base)   SingletonModifier (IMP::kernel)   
AndPDBSelector (IMP::atom)   DistancePairScore (IMP::score_functor)   
  K  
PointerMember (IMP::base)   SingletonPredicate (IMP::kernel)   
Angle (IMP::atom)   DistancePairScore (IMP::core)   PointGeometry (IMP::display)   SingletonRestraint (IMP::core)   
AngleRestraint (IMP::core)   DistanceRestraint (IMP::core)   KClosePairsPairScore (IMP::core)   PolarResamplingParameters (IMP::em2d)   SingletonsConstraint (IMP::container)   
AngleSingletonScore (IMP::atom)   DistributePairsScoreState (IMP::container)   KernelParameters (IMP::em)   PolygonGeometry (IMP::display)   SingletonScore (IMP::kernel)   
AngleTripletScore (IMP::core)   DistributeQuadsScoreState (IMP::container)   Key (IMP::kernel)   PPDBSelector (IMP::atom)   SingletonsGeometry (IMP::display)   
ApplicationTestCase (IMP.test)   DistributeSingletonsScoreState (IMP::container)   KinematicForest (IMP::kinematics)   PredicatePairsRestraint (IMP::container)   SingletonsOptimizerState (IMP::container)   
Array (IMP::base)   DistributeTripletsScoreState (IMP::container)   KinematicForestScoreState (IMP::kinematics)   PredicateQuadsRestraint (IMP::container)   SingletonsRestraint (IMP::container)   
AssemblyHeader (IMP::multifit)   Distribution (IMP::saxs)   KinematicNode (IMP::kinematics)   PredicateSingletonScore (IMP::core)   SingletonStatistical (IMP::score_functor)   
Assignment (IMP::domino)   DockOrder (IMP.em2d.buildxlinks)   KMeans (IMP::kmeans)   PredicateSingletonsRestraint (IMP::container)   SkinSurfaceGeometry (IMP::display)   
AssignmentContainer (IMP::domino)   DOF (IMP::kinematics)   
  L  
PredicateTripletsRestraint (IMP::container)   Slave (IMP.parallel)   
AssignmentsTable (IMP::domino)   DOFsSampler (IMP::kinematics)   PrincipalComponentAnalysisD (IMP::algebra)   SlaveArray (IMP.parallel)   
Atom (IMP::atom)   Domain (IMP::atom)   LabelGeometry (IMP::display)   PrismaticJoint (IMP::kinematics)   Slice (IMP::domino)   
ATOMPDBSelector (IMP::atom)   DominoModel (IMP.em2d.DominoModel)   LangevinThermostatOptimizerState (IMP::atom)   ProbabilisticAnchorGraph (IMP::multifit)   SmoothingFunction (IMP::atom)   
AtomType (IMP::atom)   DominoSampler (IMP::domino)   LeavesRefiner (IMP::core)   ProbabilisticSubsetFilterTable (IMP::domino)   Soap (IMP::score_functor)   
AttributeOptimizer (IMP::kernel)   Dope (IMP::score_functor)   LennardJones (IMP::atom)   Profile (IMP::saxs)   SoftCylinderPairScore (IMP::misc)   
AttributeSingletonPredicate (IMP::core)   DopePairScore (IMP::atom)   LennardJonesPairScore (IMP::atom)   ProfileFitter (IMP::saxs)   SoftSpherePairScore (IMP::core)   
  B  
DummyRestraint (IMP::multifit)   LessPairBySecond (IMP::em2d)   Profiler (IMP::benchmark)   SolventAccessibleSurface (IMP::saxs)   
DummyRestraint (IMP::em2d)   Linear (IMP::core)   ProjectingOptions (IMP::em2d)   SparseGrid3D (IMP::algebra)   
BackbonePDBSelector (IMP::atom)   DynamicListPairContainer (IMP::container)   Linear1DFunction (IMP::isd)   ProjectingParameters (IMP::em2d)   SparseGridStorageD (IMP::algebra)   
BallMover (IMP::symmetry)   DynamicListQuadContainer (IMP::container)   LinearFit2D (IMP::algebra)   ProjectionFinder (IMP::em2d)   SparseSymmetricPairMemoizer (IMP::base)   
BallMover (IMP::core)   DynamicListSingletonContainer (IMP::container)   LinearLowerBound (IMP::score_functor)   ProjectionMask (IMP::em2d)   SparseUnboundedGrid3D (IMP::algebra)   
BerendsenThermostatOptimizerState (IMP::atom)   DynamicListTripletContainer (IMP::container)   ListAssignmentContainer (IMP::domino)   ProjectionParameters (IMP::em2d)   SparseUnboundedGridD (IMP::algebra)   
BildWriter (IMP::display)   DynamicNearestNeighbor3D (IMP::algebra)   ListAssignmentsTable (IMP::domino)   ProjectionParametersScoreState (IMP::em2d)   SphereD (IMP::algebra)   
BinormalTerm (IMP::modeller)   
  E  
ListPairContainer (IMP::container)   ProjectionStates (IMP::em2d)   SphereDistance (IMP::score_functor)   
BivariateFunction (IMP::isd)   ListQuadContainer (IMP::container)   ProteinKinematics (IMP::kinematics)   SphereDistancePairScore (IMP::core)   
ForceFieldParameters::Bond (IMP::atom)   EdgePairGeometry (IMP::core)   ListSingletonContainer (IMP::container)   ProteinLigandAtomPairScore (IMP::atom)   SphereDistanceToSingletonScore (IMP::core)   
Bond (IMP::atom)   EdgePairsGeometry (IMP::core)   ListSubsetFilterTable (IMP::domino)   ProteinLigandRestraint (IMP::atom)   SphereGeometry (IMP::display)   
BondAngleRevoluteJoint (IMP::kinematics)   ElementTable (IMP::atom)   ListTripletContainer (IMP::container)   ProteinsAnchorsSamplingSpace (IMP::multifit)   SpherePatch3D (IMP::algebra)   
Bonded (IMP::atom)   Ellipsoid3D (IMP::algebra)   LoadLink (IMP::rmf)   ProteomicsData (IMP::multifit)   SphericalVector3D (IMP::algebra)   
BondedPairFilter (IMP::atom)   EllipsoidGeometry (IMP::display)   LocalPlanner (IMP::kinematics)   ProteomicsEMAlignmentAtomic (IMP::multifit)   SpiderHeader (IMP::em)   
BondEndpointsRefiner (IMP::atom)   Em2DRestraint (IMP::em2d)   LocalSlave (IMP.parallel)   PymolWriter (IMP::display)   SpiderImageReaderWriter (IMP::em2d)   
BondGeometry (IMP::atom)   EM2DScore (IMP::em2d)   LogEmbeddingD (IMP::algebra)   PythonDirectedGraph (IMP::kernel)   SpiderMapReaderWriter (IMP::em)   
BondGraph (IMP::atom)   Embedding (IMP::statistics)   LognormalRestraint (IMP::isd)   
  Q  
StateAdaptor (IMP::misc)   
BondPairContainer (IMP::atom)   EMReaderWriter (IMP::em)   LogPairScore (IMP::misc)   Statistical (IMP::score_functor)   
BondsGeometry (IMP::atom)   Ensemble (IMP::multifit)   LowestRefinedPairScore (IMP::misc)   QuadConstraint (IMP::core)   StatisticalPairScore (IMP::core)   
BondSingletonScore (IMP::atom)   EnvelopeFitRestraint (IMP::em)   LRUCache (IMP::base)   QuadContainer (IMP::kernel)   Statistics (IMP.isd.Statistics)   
BoundedGridRangeD (IMP::algebra)   EnvelopePenetrationRestraint (IMP::em)   
  M  
QuadContainerAdaptor (IMP::kernel)   SteepestDescent (IMP::core)   
BoundingBoxD (IMP::algebra)   EnvelopeScore (IMP::em)   QuadContainerSet (IMP::container)   StereochemistryPairFilter (IMP::atom)   
BoundingBoxGeometry (IMP::display)   EqualitySubsetFilterTable (IMP::domino)   Manager (IMP.parallel)   QuadContainerStatistics (IMP::container)   Subset (IMP::domino)   
BoxSweepClosePairsFinder (IMP::core)   EquivalenceAndExclusionSubsetFilterTable (IMP::domino)   map (IMP::base)   QuadModifier (IMP::kernel)   SubsetFilter (IMP::domino)   
BranchAndBoundAssignmentsTable (IMP::domino)   EquivalenceSubsetFilterTable (IMP::domino)   MapDistanceTransform (IMP::em)   QuadPredicate (IMP::kernel)   SubsetFilterTable (IMP::domino)   
BranchAndBoundSampler (IMP::domino)   Error (IMP.parallel)   MapReaderWriter (IMP::em)   QuadraticClosePairsFinder (IMP::core)   SurfaceMeshGeometry (IMP::display)   
BrownianDynamics (IMP::atom)   EuclideanMetric (IMP::statistics)   MarginalHBondRestraint (IMP::isd)   QuadRestraint (IMP::core)   SurfaceShellDensityMap (IMP::em)   
  C  
EuclideanVectorKDMetric (IMP::algebra)   MarginalNOERestraint (IMP::isd)   QuadsConstraint (IMP::container)   Switching (IMP::isd)   
EvaluationState (IMP::kernel)   MasksManager (IMP::em2d)   QuadScore (IMP::kernel)   
  T  
CAlphaPDBSelector (IMP::atom)   EventException (IMP::base)   Mass (IMP::atom)   QuadsOptimizerState (IMP::container)   
CappedAssignmentContainer (IMP::domino)   EventPairsOptimizerState (IMP::container)   MasterCommunicator (IMP.parallel.master_communicator)   QuadsRestraint (IMP::container)   TableRefiner (IMP::core)   
CBetaPDBSelector (IMP::atom)   EventQuadsOptimizerState (IMP::container)   MatchTemplateResult (IMP::em2d)   QuasiNewton (IMP::gsl)   TALOSReader (IMP.isd.TALOSReader)   
CenteredMat (IMP::em2d)   EventSingletonsOptimizerState (IMP::container)   MaxVectorKDMetric (IMP::algebra)   
  R  
TALOSRestraint (IMP::isd)   
Centroid (IMP::core)   EventTripletsOptimizerState (IMP::container)   MCCGSampler (IMP::core)   TestCase (IMP.test)   
CentroidOfRefined (IMP::core)   ExampleComplexRestraint (IMP::example)   MeanAbsoluteDifference (IMP::em2d)   RadialDistributionFunction (IMP::saxs)   TextInput (IMP::base)   
Chain (IMP::atom)   ExampleConstraint (IMP::example)   Memoizer (IMP::base)   RadiusDependentDistanceMask (IMP::em)   TextOutput (IMP::base)   
ChainPDBSelector (IMP::atom)   ExampleDecorator (IMP::example)   MergeTreeBuilder (IMP::multifit)   RadiusDependentKernelParameters (IMP::em)   TextWriter (IMP::display)   
Charged (IMP::atom)   ExampleObject (IMP::example)   Metric (IMP::statistics)   RadiusOfGyrationRestraint (IMP::saxs)   TIFFImageReaderWriter (IMP::em2d)   
CHARMMAtom (IMP::atom)   ExamplePairScore (IMP::example)   MetricClosePairsFinder (IMP::misc)   RadiusOfGyrationRestraint (IMP::multifit)   Timer (IMP::base)   
CHARMMAtomTopology (IMP::atom)   ExampleRestraint (IMP::example)   MinimumPairRestraint (IMP::container)   RAII (IMP::base)   Transform (IMP::core)   
CHARMMBondEndpoint (IMP::atom)   ExampleSingletonModifier (IMP::example)   MinimumPairScore (IMP::container)   RangeViewAssignmentContainer (IMP::domino)   Transformation2D (IMP::algebra)   
CHARMMBondParameters (IMP::atom)   ExampleSubsetFilterTable (IMP::example)   MinimumQuadRestraint (IMP::container)   ReadAssignmentContainer (IMP::domino)   Transformation3D (IMP::algebra)   
CHARMMConnection (IMP::atom)   ExampleTemplateClassD (IMP::example)   MinimumQuadScore (IMP::container)   ReadHDF5AssignmentContainer (IMP::domino)   TransformationAndReflectionSymmetry (IMP::core)   
CHARMMDihedralParameters (IMP::atom)   ExampleUnaryFunction (IMP::example)   MinimumRestraint (IMP::core)   RecursiveAssignmentsTable (IMP::domino)   TransformationJoint (IMP::kinematics)   
CHARMMIdealResidueTopology (IMP::atom)   Exception (IMP::base)   MinimumRestraintScoreSubsetFilterTable (IMP::domino)   RecursivePartitionalClusteringEmbedding (IMP::statistics)   TransformationSymmetry (IMP::core)   
CHARMMInternalCoordinate (IMP::atom)   ExcludedVolumeRestraint (IMP::core)   MinimumSingletonRestraint (IMP::container)   RecursivePartitionalClusteringMetric (IMP::statistics)   TransformedDistancePairScore (IMP::core)   
CHARMMParameters (IMP::atom)   ExclusionSubsetFilterTable (IMP::domino)   MinimumSingletonScore (IMP::container)   RecursiveStates (IMP::domino)   Triangle3D (IMP::algebra)   
CHARMMPatch (IMP::atom)   ExclusiveConsecutivePairContainer (IMP::container)   MinimumTripletRestraint (IMP::container)   RefCountChecker (IMP.test)   TriangleGeometry (IMP::display)   
CHARMMResidueTopology (IMP::atom)   ExclusiveConsecutivePairFilter (IMP::container)   MinimumTripletScore (IMP::container)   Reference (IMP::core)   TripletConstraint (IMP::core)   
CHARMMResidueTopologyBase (IMP::atom)   ExtendedGridIndexD (IMP::algebra)   Model (IMP::kernel)   ReferenceFrame3D (IMP::algebra)   TripletContainer (IMP::kernel)   
CHARMMSegmentTopology (IMP::atom)   EzRestraint (IMP::atom)   ModelException (IMP::base)   ReferenceFrameGeometry (IMP::display)   TripletContainerAdaptor (IMP::kernel)   
CHARMMStereochemistryRestraint (IMP::atom)   
  F  
ModellerRestraints (IMP.modeller)   RefinedPairsPairScore (IMP::core)   TripletContainerSet (IMP::container)   
CHARMMTopology (IMP::atom)   ModelLoader (IMP.modeller)   Refiner (IMP::kernel)   TripletContainerStatistics (IMP::container)   
ChecksScoreState (IMP::core)   FFTFitting (IMP::multifit)   ModelObject (IMP::kernel)   Reflection3D (IMP::algebra)   TripletModifier (IMP::kernel)   
ChiFreeScore (IMP::saxs)   FFTFittingOutput (IMP::multifit)   ModifierVisitor (IMP::core)   RegistrationResult (IMP::em2d)   TripletPredicate (IMP::kernel)   
ChildrenRefiner (IMP::core)   FilterGeometry (IMP::display)   Mol2Selector (IMP::atom)   RelativePositionMover (IMP::em2d)   TripletRestraint (IMP::core)   
ChimeraWriter (IMP::display)   Fine2DRegistrationRestraint (IMP::em2d)   MolCnSymmAxisDetector (IMP::cnmultifit)   RemoteError (IMP.parallel)   TripletsConstraint (IMP::container)   
ChiScore (IMP::saxs)   FitRestraint (IMP::em)   MolecularDynamics (IMP::atom)   RemoveRigidMotionOptimizerState (IMP::atom)   TripletScore (IMP::kernel)   
ChiScoreLog (IMP::saxs)   FittingSolutionRecord (IMP::multifit)   MolecularDynamics (IMP::isd)   RemoveTranslationOptimizerState (IMP::atom)   TripletsOptimizerState (IMP::container)   
ChiSquaredScore (IMP::em2d)   FittingSolutions (IMP::em)   MolecularDynamicsMover (IMP::isd)   ReplicaExchange (IMP::mpi)   TripletsRestraint (IMP::container)   
ChiSquareMetric (IMP::statistics)   FittingStates (IMP::multifit)   Molecule (IMP::atom)   Representation (IMP.restrainer)   TruncatedHarmonic (IMP::core)   
CloseBipartitePairContainer (IMP::container)   FixedRefiner (IMP::core)   MonteCarlo (IMP::core)   RepulsiveDistancePairScore (IMP::isd)   Typed (IMP::core)   
ClosedCubicSpline (IMP::core)   FixedXYZ (IMP::algebra)   MonteCarloMover (IMP::core)   Residue (IMP::atom)   TypedPairScore (IMP::core)   
ClosePairContainer (IMP::container)   FloatIndex (IMP::kernel)   MonteCarloMoverResult (IMP::core)   ResidueRotamer (IMP::rotamer)   
  U  
ClosePairsFinder (IMP::core)   FNormal (IMP::isd)   MonteCarloRelativeMoves (IMP.em2d.MonteCarloRelativeMoves)   ResidueType (IMP::atom)   
ClosePairsPairScore (IMP::core)   ForceFieldParameters (IMP::atom)   MonteCarloWithBasinHopping (IMP::core)   Restraint (IMP::kernel)   UnaryFunction (IMP::kernel)   
ClusterRecord (IMP.em2d.solutions_io)   ForceSwitch (IMP::atom)   MonteCarloWithLocalOptimization (IMP::core)   Restraint (IMP.restrainer)   UnaryFunctionEvaluate (IMP::score_functor)   
CMMWriter (IMP::display)   FormFactorTable (IMP::saxs)   Mover (IMP::core)   Restraint (IMP::saxs)   UnboundedGridRangeD (IMP::algebra)   
CnSymmAxisDetector (IMP::cnmultifit)   Fragment (IMP::atom)   MoverBase (IMP::core)   RestraintCache (IMP::domino)   UncheckedWeakPointer (IMP::base)   
CoarseCC (IMP::em)   FretData (IMP::isd)   MoveStatisticsScoreState (IMP::core)   RestraintGeometry (IMP::display)   Undecorator (IMP::kernel)   
CoarseCCatIntervals (IMP::em)   FretRestraint (IMP::isd)   MRCReaderWriter (IMP::em)   RestraintsAdaptor (IMP::kernel)   UniformBackboneSampler (IMP::kinematics)   
CoarseConvolution (IMP::em)   
  G  
MSConnectivityRestraint (IMP::core)   RestraintScoreSubsetFilterTable (IMP::domino)   UnivariateFunction (IMP::isd)   
CoinFlipPairPredicate (IMP::core)   MultipleBinormalRestraint (IMP::modeller)   RestraintSet (IMP::kernel)   UnorderedTypePairPredicate (IMP::core)   
CoinFlipQuadPredicate (IMP::core)   GaussianProcessInterpolation (IMP::isd)   MultivariateFNormalSufficient (IMP::isd)   RestraintSetGeometry (IMP::display)   UnorderedTypeQuadPredicate (IMP::core)   
CoinFlipSingletonPredicate (IMP::core)   GaussianProcessInterpolationRestraint (IMP::isd)   MyMetric (write_a_metric)   RestraintsScoringFunction (IMP::core)   UnorderedTypeSingletonPredicate (IMP::core)   
CoinFlipTripletPredicate (IMP::core)   GaussianRestraint (IMP::isd)   
  N  
ResultsDB (IMP.em2d.solutions_io)   UnorderedTypeTripletPredicate (IMP::core)   
CollisionCrossSection (IMP::em2d)   GeneralizedGuinierPorodFunction (IMP::isd)   RevoluteJoint (IMP::kinematics)   UsageException (IMP::base)   
Color (IMP::display)   GenericAttributeSingletonScore (IMP::core)   NearestNeighborD (IMP::algebra)   RigidBodiesImageFitRestraint (IMP::em2d)   
  V  
Colored (IMP::display)   GenericBoundingBox3DSingletonScore (IMP::core)   NearestNeighborsClosePairsFinder (IMP::core)   RigidBody (IMP::core)   
CommandDispatcher (IMP.kernel)   GenericDistanceToSingletonScore (IMP::core)   NeighborsTable (IMP::core)   RigidBodyDerivativeGeometry (IMP::core)   Value (IMP::base)   
CommonEndpointPairFilter (IMP::misc)   GenericScopedRemoveRestraint (IMP::kernel)   NestedRigidBodyStates (IMP::domino)   RigidBodyDerivativesGeometry (IMP::core)   ValueException (IMP::base)   
ComplementarityRestraint (IMP::multifit)   GenericScopedRemoveScoreState (IMP::kernel)   NetworkError (IMP.parallel)   RigidBodyDiffusion (IMP::atom)   Vector (IMP::base)   
ComponentHeader (IMP::multifit)   GenericScopedRestraint (IMP::kernel)   NOERestraint (IMP::isd)   RigidBodyDistancePairScore (IMP::core)   VectorD (IMP::algebra)   
CompositeJoint (IMP::kinematics)   GenericScopedScoreState (IMP::kernel)   NoMoreSlavesError (IMP.parallel)   RigidBodyFrameGeometry (IMP::core)   VectorDEmbedding (IMP::statistics)   
CompoundStates (IMP::domino)   GeometricHash (IMP::multifit)   NonAlternativePDBSelector (IMP::atom)   RigidBodyFramesGeometry (IMP::core)   VectorInputD (IMP::algebra)   
Cone3D (IMP::algebra)   GeometricPrimitiveD (IMP::algebra)   NonCopyable (IMP::base)   RigidBodyHierarchyGeometry (IMP::core)   VectorInputD< 1 > (IMP::algebra)   
Configuration (IMP::kernel)   Geometry (IMP::display)   NonHydrogenMol2Selector (IMP::atom)   RigidBodyMember (IMP::core)   VectorKDMetric (IMP::algebra)   
ConfigurationSet (IMP::kernel)   GeometryProcessor (IMP::display)   NonRigidMember (IMP::core)   RigidBodyMover (IMP::core)   VelocityScalingOptimizerState (IMP::atom)   
ConfigurationSetRMSDMetric (IMP::statistics)   GeometrySet (IMP::display)   NonWaterNonHydrogenPDBSelector (IMP::atom)   RigidBodyMover (IMP::symmetry)   VersionInfo (IMP::base)   
ConfigurationSetXYZEmbedding (IMP::statistics)   GridClosePairsFinder (IMP::core)   NonWaterPDBSelector (IMP::atom)   RigidBodyStates (IMP::domino)   VolumeRestraint (IMP::core)   
ConjugateGradients (IMP::core)   GridD (IMP::algebra)   NormalizedSphereDistancePairScore (IMP::core)   RigidBodyTorque (IMP::core)   vonMises (IMP::isd)   
ConjugateGradients (IMP::gsl)   GridIndexD (IMP::algebra)   NormalMover (IMP::core)   RigidClosePairsFinder (IMP::core)   vonMisesKappaConjugateRestraint (IMP::isd)   
ConnectingPairContainer (IMP::container)   GridStates (IMP::em2d)   NotPDBSelector (IMP::atom)   RigidMember (IMP::core)   vonMisesKappaJeffreysRestraint (IMP::isd)   
ConnectivityRestraint (IMP::core)   GSLOptimizer (IMP::gsl)   NPDBSelector (IMP::atom)   RotamerAngleTuple (IMP::rotamer)   vonMisesSufficient (IMP::isd)   
ConsecutivePairContainer (IMP::container)   
  H  
Nuisance (IMP::isd)   RotamerCalculator (IMP::rotamer)   Voxel (IMP::em)   
ConsecutivePairFilter (IMP::container)   
  O  
RotamerLibrary (IMP::rotamer)   
  W  
ConstantPairPredicate (IMP::core)   Harmonic (IMP::score_functor)   Rotation2D (IMP::algebra)   
ConstantQuadPredicate (IMP::core)   Harmonic (IMP::core)   Object (IMP::base)   Rotation3D (IMP::algebra)   WarningContext (IMP::base)   
ConstantRestraint (IMP::core)   HarmonicDistancePairScore (IMP::core)   OpenCubicSpline (IMP::score_functor)   RRT (IMP::kinematics)   WaterPDBSelector (IMP::atom)   
ConstantSingletonPredicate (IMP::core)   HarmonicLowerBound (IMP::score_functor)   OpenCubicSpline (IMP::core)   RunInTempDir (IMP.test)   WeakPointer (IMP::base)   
ConstantTripletPredicate (IMP::core)   HarmonicLowerBound (IMP::core)   Optimizer (IMP::kernel)   
  S  
Weight (IMP::isd)   
Constraint (IMP::kernel)   HarmonicSphereDistancePairScore (IMP::core)   OptimizerState (IMP::kernel)   WeightedExcludedVolumeRestraint (IMP::multifit)   
ConstVector (IMP::base)   HarmonicUpperBound (IMP::score_functor)   OptionParser (IMP.kernel)   SameResiduePairFilter (IMP::atom)   WeightedProfileFitter (IMP::saxs)   
Container (IMP::kernel)   HarmonicUpperBound (IMP::core)   Order (IMP::domino)   SampleAssignmentContainer (IMP::domino)   WeightedSphereDistancePairScore (IMP::core)   
Context (IMP.parallel)   HarmonicUpperBoundSphereDiameterPairScore (IMP::core)   OrderedTypePairPredicate (IMP::core)   SampledDensityMap (IMP::em)   WeightMover (IMP::isd)   
Copy (IMP::atom)   HarmonicUpperBoundSphereDistancePairScore (IMP::core)   OrderedTypeQuadPredicate (IMP::core)   Sampler (IMP::kernel)   WeightRestraint (IMP::isd)   
Cosine (IMP::core)   HarmonicWell (IMP::core)   OrderedTypeSingletonPredicate (IMP::core)   SaveLink (IMP::rmf)   WeightScore (IMP::score_functor)   
CoulombPairScore (IMP::atom)   HasHigherCCC (IMP::em2d)   OrderedTypeTripletPredicate (IMP::core)   SaveOptimizerState (IMP::rmf)   WormLikeChain (IMP::misc)   
Covariance1DFunction (IMP::isd)   HasLowerScore (IMP::em2d)   OrPDBSelector (IMP::atom)   SaveToConfigurationSetOptimizerState (IMP::kernel)   WriteAssignmentContainer (IMP::domino)   
Cover (IMP::core)   HeapAssignmentContainer (IMP::domino)   OwnerPointer (IMP::base)   Scale (IMP::isd)   WriteHDF5AssignmentContainer (IMP::domino)   
CoverBond (IMP::atom)   HeapRecord (IMP.em2d.solutions_io)   
  P  
ScopedAddCacheAttribute (IMP::kernel)   WriteOptimizerState (IMP::display)   
CoverRefined (IMP::core)   HierarchiesGeometry (IMP::atom)   ScopedSetAttribute (IMP::kernel)   WritePDBOptimizerState (IMP::atom)   
CPDBSelector (IMP::atom)   Hierarchy (IMP::atom)   PackedAssignmentContainer (IMP::domino)   Score (IMP::score_functor)   Writer (IMP::display)   
CreateLogContext (IMP::base)   Hierarchy (IMP::core)   PairConstraint (IMP::core)   ScoreAccumulator (IMP::kernel)   WriterAdaptor (IMP::display)   
CrossLinkData (IMP::isd)   HierarchyCounter (IMP::core)   PairContainer (IMP::kernel)   ScoreFunction (IMP::em2d)   WriteRestraintScoresOptimizerState (IMP::core)   
CustomXYZR (IMP::misc)   HierarchyGeometry (IMP::atom)   PairContainerAdaptor (IMP::kernel)   ScoreState (IMP::kernel)   
  X  
CvEstimator (IMP.isd.TuneRex)   HierarchyLoadLink (IMP::rmf)   PairContainerSet (IMP::container)   ScoreUnaryFunction (IMP::score_functor)   
Cylinder3D (IMP::algebra)   HierarchySaveLink (IMP::rmf)   PairContainerStatistics (IMP::container)   ScoringFunction (IMP::kernel)   Xlink (IMP.em2d.buildxlinks)   
CylinderGeometry (IMP::display)   HierarchyTraits (IMP::core)   PairGeometry (IMP::display)   ScoringFunctionAdaptor (IMP::kernel)   XlinksDict (IMP.em2d.buildxlinks)   
CysteineCrossLinkData (IMP::isd)   HierarchyVisitor (IMP::core)   PairListSubsetFilterTable (IMP::domino)   SecondaryStructureResidue (IMP::atom)   XMLDisplay (IMP.restrainer)   
CysteineCrossLinkRestraint (IMP::isd)   HighDensityEmbedding (IMP::em)   PairModifier (IMP::kernel)   Segment3D (IMP::algebra)   XMLRepresentation (IMP.restrainer)   
  D  
Histogram (IMP::statistics)   PairPredicate (IMP::kernel)   SegmentationParameters (IMP::em2d)   XMLRestraint (IMP.restrainer)   
HistogramD (IMP::statistics)   PairRestraint (IMP::core)   SegmentGeometry (IMP::display)   XplorReaderWriter (IMP::em)   
Database2 (IMP.em2d.Database)   History (IMP.isd.History)   PairsConstraint (IMP::container)   Selection (IMP::atom)   XYZ (IMP::core)   
DataObject (IMP::core)   HybridMonteCarlo (IMP::isd)   PairScore (IMP::kernel)   SelectionGeometry (IMP::atom)   XYZDerivativeGeometry (IMP::core)   
DataPointsAssignment (IMP::multifit)   HydrogenPDBSelector (IMP::atom)   PairsGeometry (IMP::display)   SerialMover (IMP::core)   XYZDerivativesGeometry (IMP::core)   
DecayPairContainerOptimizerState (IMP::misc)   
  I  
PairsOptimizerState (IMP::container)   set (IMP::base)   XYZR (IMP::core)   
Decorator (IMP::kernel)   PairsRestraint (IMP::container)   SetCheckState (IMP::base)   XYZRGeometry (IMP::core)   
DefaultEmbeddingD (IMP::algebra)   Image (IMP::em2d)   ParabolicFit2D (IMP::algebra)   SetLogState (IMP::base)   XYZRsGeometry (IMP::core)   
DeltaDistributionFunction (IMP::saxs)   ImageHeader (IMP::em)   Particle (IMP::kernel)   SetLogTarget (IMP::base)   XYZStates (IMP::domino)   
DenseGrid3D (IMP::algebra)   ImageReaderWriter (IMP::em2d)   ParticleAdaptor (IMP::kernel)   SetNumberOfThreads (IMP::base)   
DenseGridStorageD (IMP::algebra)   IMPRestraints (IMP.modeller)   ParticleEmbedding (IMP::statistics)   SettingsData (IMP::multifit)   
DensityDataPoints (IMP::multifit)   ImproperSingletonScore (IMP::atom)   ParticleIndexAdaptor (IMP::kernel)   sfo_common (IMP.isd.shared_functions)   
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X