IMP::score_functor Namespace Reference

See IMP.score_functor for more information.

Classes
class	AddScores
class	DistancePairScore
	Create efficient distance-based pair scores. More...
class	Dope
class	Harmonic
class	HarmonicLowerBound
class	HarmonicUpperBound
class	LinearLowerBound
class	OpenCubicSpline
	Open cubic spline function. More...
struct	Score
class	ScoreUnaryFunction
class	Shift
class	SingletonStatistical
class	Soap
class	SphereDistance
class	Statistical
class	UnaryFunctionEvaluate
class	WeightScore

Typedefs
typedef Key< 6453462, false >	DopeType
typedef IMP::base::Vector < DopeType >	DopeTypes

Functions
std::string	get_data_path (std::string file_name)
	Return the full path to installed data. More...
std::string	get_example_path (std::string file_name)
	Return the path to installed example data for this module. More...

Standard module methods
All IMP modules have a set of standard methods to help get information about the module and about files associated with the module.
std::string	get_module_version ()
std::string	get_module_name ()

Typedef Documentation

typedef Key<6453462, false> IMP::score_functor::DopeType

The type of atoms for Dope.

Definition at line 21 of file Dope.h.

typedef IMP::base::Vector< DopeType > IMP::score_functor::DopeTypes

Pass or store a set of DopeType .

Definition at line 22 of file Dope.h.

Function Documentation

std::string IMP::score_functor::get_data_path

(

std::string

file_name

)

Each module has its own data directory, so be sure to use the version of this function in the correct module. To read the data file "data_library" that was placed in the data directory of module "mymodule", do something like

std::ifstream in(IMP::mymodule::get_data_path("data_library"));

This will ensure that the code works when IMP is installed or used via the setup_environment.sh script.

std::string IMP::score_functor::get_example_path

(

std::string

file_name

)

Each module has its own example directory, so be sure to use the version of this function in the correct module. For example to read the file example_protein.pdb located in the examples directory of the IMP::atom module, do

 IMP::atom::read_pdb(IMP::atom::get_example_path("example_protein.pdb",
model));

This will ensure that the code works when IMP is installed or used via the setup_environment.sh script.