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IMP
2.1.1
The Integrative Modeling Platform
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IMP
2.1.1
The Integrative Modeling Platform
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A shared container for Triplets. More...
#include <IMP/kernel/TripletContainer.h>
Inheritance diagram for IMP::kernel::TripletContainer:Public Types | |
| typedef ParticleIndexTriplet | ContainedIndexType |
| typedef ParticleIndexTriplets | ContainedIndexTypes |
| typedef ParticleTriplet | ContainedType |
| typedef ParticleTripletsTemp | ContainedTypes |
Public Member Functions | |
| void | apply (const TripletModifier *sm) const |
| Apply a SingletonModifier to the contents. | |
| void | apply_generic (const TripletModifier *m) const |
| Just use apply() in the base class. | |
| bool | get_contains_particle_triplet (ParticleTriplet v) const |
| This function is very slow and you should think hard about using it. More... | |
| virtual ParticleIndexTriplets | get_indexes () const =0 |
| unsigned int | get_number_of_particle_triplets () const |
| ParticleTriplet | get_particle_triplet (unsigned int i) const |
| ParticleTripletsTemp | get_particle_triplets () const |
| virtual ParticleIndexTriplets | get_range_indexes () const =0 |
| Public Member Functions inherited from IMP::kernel::Container | |
| virtual void | do_after_evaluate (DerivativeAccumulator *accpt) |
| Reset changed status. | |
| ModelObjectsTemp | do_get_outputs () const |
| containers don't have outputs | |
| virtual ParticleIndexes | get_all_possible_indexes () const =0 |
| Get contained particles. More... | |
| ParticlesTemp | get_all_possible_particles () const |
| int | get_contents_version () const |
| bool | get_is_changed () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::kernel::ScoreState | |
| ScoreState (kernel::Model *m, std::string name) | |
| ScoreState (kernel::Model *m) | |
| ScoreState (std::string name="ScoreState %1%") | |
| void | after_evaluate (DerivativeAccumulator *accpt) |
| Do post evaluation work if needed. | |
| void | before_evaluate () |
| Force update of the structure. | |
| ContainersTemp | get_input_containers () const |
| ParticlesTemp | get_input_particles () const |
| ContainersTemp | get_output_containers () const |
| ParticlesTemp | get_output_particles () const |
| Public Member Functions inherited from IMP::kernel::ModelObject | |
| ModelObject (kernel::Model *m, std::string name) | |
| ModelObject (std::string name) | |
| virtual void | do_set_model (kernel::Model *) |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. | |
| bool | get_has_required_score_states () const |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| bool | get_is_part_of_model () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| void | set_has_dependencies (bool tf) |
| void | set_has_required_score_states (bool tf) |
| virtual void | set_model (kernel::Model *m) |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| virtual void | do_destroy () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| virtual VersionInfo | get_version_info () const |
| Get information about the module and version of the object. | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
| virtual std::string | get_type_name () const |
Protected Member Functions | |
| TripletContainer (kernel::Model *m, std::string name="TripletContainer %1%") | |
| virtual void | do_apply (const TripletModifier *sm) const =0 |
| virtual bool | do_get_provides_access () const |
| Protected Member Functions inherited from IMP::kernel::Container | |
| Container (kernel::Model *m, std::string name="Container %1%") | |
| void | set_is_changed (bool tf) |
| Call this with true when the contents of the container change. More... | |
| Protected Member Functions inherited from IMP::kernel::ScoreState | |
| virtual void | do_before_evaluate ()=0 |
| Protected Member Functions inherited from IMP::kernel::ModelObject | |
| virtual ModelObjectsTemp | do_get_inputs () const =0 |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| Object () | |
Stores a shared collection of Triplets.
Definition at line 37 of file kernel/TripletContainer.h.
| bool IMP::kernel::TripletContainer::get_contains_particle_triplet | ( | ParticleTriplet | v | ) | const |
Return whether the container has the given element.
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pure virtual |
Get all the indexes contained in the container.
| unsigned int IMP::kernel::TripletContainer::get_number_of_particle_triplets | ( | ) | const |
| ParticleTriplet IMP::kernel::TripletContainer::get_particle_triplet | ( | unsigned int | i | ) | const |
| ParticleTripletsTemp IMP::kernel::TripletContainer::get_particle_triplets | ( | ) | const |
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pure virtual |
Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from input list (those that are far apart in addition to those that are close).