class for envelope based scoring using MapDistanceTransform

Inheritance diagram for IMP::em::EnvelopeScore:

Public Member Functions
	EnvelopeScore (const MapDistanceTransform *mdt)

IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object.

bool	is_penetrating (const std::vector< IMP::algebra::Vector3D > &points, float penetration_thr) const

bool	is_penetrating (const std::vector< IMP::algebra::Vector3D > &points, const IMP::algebra::Transformation3D &trans, float penetration_thr) const

double	score (const std::vector< IMP::algebra::Vector3D > &points) const

double	score (const std::vector< IMP::algebra::Vector3D > &points, const IMP::algebra::Transformation3D &trans) const

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

virtual void	do_destroy ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

virtual std::string	get_type_name () const

Additional Inherited Members
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

	Object ()

Detailed Description

Definition at line 21 of file EnvelopeScore.h.

Member Function Documentation

bool IMP::em::EnvelopeScore::is_penetrating	(	const std::vector< IMP::algebra::Vector3D > &	points,
		float	penetration_thr
	)		const

check for penetration with respect to the envelope as defined by the distance transform

Parameters

[in]	points	- check this set of points for penetration
[in]	penetration_thr	- threshold that defines penetration use penetration_thr=0 to require for all points inside the envelope to allow some penetration set the threshold to the -distance of the allowed penetration distance. Recommended value is map resolution.

bool IMP::em::EnvelopeScore::is_penetrating	(	const std::vector< IMP::algebra::Vector3D > &	points,
		const IMP::algebra::Transformation3D &	trans,
		float	penetration_thr
	)		const

same as above

Parameters

[in]	points
[in]	trans	- apply this transformation on points before checking for penetrations
[in]	penetration_thr

double IMP::em::EnvelopeScore::score ( const std::vector< IMP::algebra::Vector3D > & points ) const

score points with respect to the distance transform the score awards points that fall into the envelope and penalizes for points outside the envelope

double IMP::em::EnvelopeScore::score	(	const std::vector< IMP::algebra::Vector3D > &	points,
		const IMP::algebra::Transformation3D &	trans
	)		const

same as above

Parameters

[in]	points
[in]	trans	- apply this transformation on points before scoring

The documentation for this class was generated from the following file: