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IMP
2.1.1
The Integrative Modeling Platform
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IMP
2.1.1
The Integrative Modeling Platform
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Embed a configuration using the XYZ coordinates of a set of particles. More...
#include <IMP/statistics/embeddings.h>
Inheritance diagram for IMP::statistics::ConfigurationSetXYZEmbedding:Public Member Functions | |
| ConfigurationSetXYZEmbedding (ConfigurationSet *cs, SingletonContainerAdaptor pi, bool align=false) | |
| unsigned int | get_number_of_items () const |
| algebra::VectorKD | get_point (unsigned int i) const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. | |
| Public Member Functions inherited from IMP::statistics::Embedding | |
| virtual algebra::VectorKDs | get_points () const |
| double | get_weight (unsigned int i) const |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| virtual void | do_destroy () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::statistics::Embedding | |
| Embedding (std::string name) | |
| virtual double | do_get_weight (unsigned int i) const |
| By default return 1.0. | |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| Object () | |
The point for each configuration of the model is a concatenation of the Cartesian coordinates of the particles contained in the passed SingletonContainer.
See ConfigurationSet for more information about the input.
Definition at line 28 of file embeddings.h.
| IMP::statistics::ConfigurationSetXYZEmbedding::ConfigurationSetXYZEmbedding | ( | ConfigurationSet * | cs, |
| SingletonContainerAdaptor | pi, | ||
| bool | align = false |
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| ) |
If align is true, all the configurations are rigidly aligned with the first before generating their coordinates.