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IMP
2.1.1
The Integrative Modeling Platform
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IMP
2.1.1
The Integrative Modeling Platform
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Fit rigid bodies to an image.
#include <IMP/em2d/RigidBodiesImageFitRestraint.h>
Inheritance diagram for IMP::em2d::RigidBodiesImageFitRestraint:Public Member Functions | |
| RigidBodiesImageFitRestraint (ScoreFunction *scf, const core::RigidBodies &rbs, Image *img) | |
| unsigned int | get_number_of_masks (const core::RigidBody &rb) const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. | |
| void | set_orientations (const core::RigidBody &rb, const algebra::Rotation3Ds &rots) |
| void | set_projecting_parameters (const ProjectingParameters &p) |
| Public Member Functions inherited from IMP::kernel::Restraint | |
| Restraint (kernel::Model *m, std::string name) | |
| Restraint (std::string name="Restraint %1%") | |
| void | add_score_and_derivatives (ScoreAccumulator sa) const |
| Restraint * | create_current_decomposition () const |
| Decompose this restraint into constituent terms for the current conf. More... | |
| Restraint * | create_decomposition () const |
| Decompose this restraint into constituent terms. More... | |
| virtual ScoringFunction * | create_scoring_function (double weight=1.0, double max=NO_MAX) const |
| ContainersTemp | get_input_containers () const |
| ParticlesTemp | get_input_particles () const |
| virtual double | get_last_score () const |
| double | get_score () const |
| bool | get_was_good () const |
| void | set_weight (Float weight) |
| Float | get_weight () const |
| double | get_maximum_score () const |
| void | set_maximum_score (double s) |
| Public Member Functions inherited from IMP::kernel::ModelObject | |
| ModelObject (kernel::Model *m, std::string name) | |
| ModelObject (std::string name) | |
| virtual void | do_set_model (kernel::Model *) |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. | |
| bool | get_has_required_score_states () const |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| bool | get_is_part_of_model () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| void | set_has_dependencies (bool tf) |
| void | set_has_required_score_states (bool tf) |
| virtual void | set_model (kernel::Model *m) |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| virtual void | do_destroy () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Protected Member Functions | |
| unsigned int | get_rigid_body_index (const core::RigidBody &rb) const |
| Protected Member Functions inherited from IMP::kernel::Restraint | |
| virtual void | do_add_score_and_derivatives (ScoreAccumulator sa) const |
| virtual Restraints | do_create_current_decomposition () const |
| virtual Restraints | do_create_decomposition () const |
| ModelObjectsTemp | do_get_outputs () const |
| Protected Member Functions inherited from IMP::kernel::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| Object () | |
Protected Attributes | |
| base::Pointer< Image > | image_ |
| KeyIndexMaps | maps_ |
| ProjectingParameters | params_ |
| bool | params_set_ |
| base::Pointer< Image > | projection_ |
| core::RigidBodies | rigid_bodies_ |
| std::vector< em2d::Images > | rigid_bodies_masks_ |
| base::Pointer< ScoreFunction > | score_function_ |
Definition at line 44 of file RigidBodiesImageFitRestraint.h.
| IMP::em2d::RigidBodiesImageFitRestraint::RigidBodiesImageFitRestraint | ( | ScoreFunction * | scf, |
| const core::RigidBodies & | rbs, | ||
| Image * | img | ||
| ) |
Initialize the class
| [in] | scf | Score function used to compute the value of the restraint |
| [in] | rbs | Rigid bodies that are restrained |
| [in] | img | Image used to compute the restraint |
| unsigned int IMP::em2d::RigidBodiesImageFitRestraint::get_number_of_masks | ( | const core::RigidBody & | rb | ) | const |
Return the number of precomputed masks associated with the rigid body Throws an exception if the rigid body is not in the set used to construct the restraint
| void IMP::em2d::RigidBodiesImageFitRestraint::set_orientations | ( | const core::RigidBody & | rb, |
| const algebra::Rotation3Ds & | rots | ||
| ) |
Set the possible rotations that a rigid body can have. A projection of the rigid body in all posible orientations is stored