A decorator for a residue with probability of secondary structure. More...

Inheritance diagram for IMP::atom::SecondaryStructureResidue:

Public Member Functions
	SecondaryStructureResidue (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id)

	SecondaryStructureResidue (const IMP::kernel::ParticleAdaptor &d)

Floats	get_all_probabilities ()
	Return all probabilities in one vector.

kernel::Particle *	get_particle () const

Float	get_prob_coil () const

Float	get_prob_helix () const

Float	get_prob_strand () const

void	set_prob_coil (Float t)

void	set_prob_helix (Float t)

void	set_prob_strand (Float t)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::kernel::Decorator
ParticleIndex	get_particle_index () const

Particle *	get_particle () const

Model *	get_model () const
	Returns the Model containing the particle.

	Decorator (Particle *p)

	Decorator ()

Static Public Member Functions
static SecondaryStructureResidue	decorate_particle (::IMP::kernel::Particle *p)

static bool	get_is_setup (const IMP::kernel::ParticleAdaptor &p)

static bool	get_is_setup (kernel::Model *m, kernel::ParticleIndex pi)
	Return true if the particle is a secondary structure residue.

static FloatKey	get_prob_coil_key ()

static FloatKey	get_prob_helix_key ()

static FloatKey	get_prob_strand_key ()

static bool	particle_is_instance (::IMP::kernel::Particle *p)

static bool	particle_is_instance (IMP::kernel::Model *m, IMP::kernel::ParticleIndex pi)

static SecondaryStructureResidue	setup_particle (IMP::kernel::ParticleAdaptor decorator, Float prob_helix, Float prob_strand, Float prob_coil)

static SecondaryStructureResidue	setup_particle (kernel::Model *m, ParticleIndex pi, Float prob_helix, Float prob_strand, Float prob_coil)

static SecondaryStructureResidue	setup_particle (kernel::Particle *res_p)
	Set up SecondaryStructureResidue with default probabilities.

Static Public Member Functions inherited from IMP::kernel::Decorator
static bool	get_is_setup (Particle *p)
	Return true if the particle can be cast to the decorator. More...

Additional Inherited Members
Protected Member Functions inherited from IMP::kernel::Decorator
	Decorator (kernel::Model *m, ParticleIndex pi)

	Decorator (ParticleAdaptor p)

Detailed Description

Contains probabilities for each sse type (helix, strand, coil)

Member Function Documentation

static SecondaryStructureResidue IMP::atom::SecondaryStructureResidue::decorate_particle ( ::IMP::kernel::Particle * p )

static

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Check explicitly instead.

static bool IMP::atom::SecondaryStructureResidue::particle_is_instance ( ::IMP::kernel::Particle * p )

static

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_is_setup() instead.

static bool IMP::atom::SecondaryStructureResidue::particle_is_instance	(	IMP::kernel::Model *	m,
		IMP::kernel::ParticleIndex	pi
	)

static

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_is_setup() instead.

static SecondaryStructureResidue IMP::atom::SecondaryStructureResidue::setup_particle	(	kernel::Model *	m,
		ParticleIndex	pi,
		Float	prob_helix,
		Float	prob_strand,
		Float	prob_coil
	)

static

Setup the particle so it can be used with this decorator.

The documentation for this class was generated from the following file: