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IMP
2.1.1
The Integrative Modeling Platform
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IMP
2.1.1
The Integrative Modeling Platform
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A container which contains all consecutive pairs from an input list. More...
#include <IMP/container/ConsecutivePairContainer.h>
Inheritance diagram for IMP::container::ConsecutivePairContainer:Public Member Functions | |
| ConsecutivePairContainer (const kernel::ParticlesTemp &ps, std::string name="ConsecutivePairContainer%1%") | |
| Get the individual particles from the passed SingletonContainer. | |
| template<class F > | |
| void | apply_generic (F *f) const |
| apply to each item in container | |
| void | do_apply (const PairModifier *sm) const |
| virtual void | do_before_evaluate () |
| virtual kernel::ModelObjectsTemp | do_get_inputs () const |
| virtual kernel::ParticleIndexes | get_all_possible_indexes () const |
| Get contained particles. More... | |
| virtual kernel::ParticleIndexPairs | get_indexes () const |
| virtual kernel::ParticleIndexPairs | get_range_indexes () const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. | |
| Public Member Functions inherited from IMP::kernel::PairContainer | |
| void | apply (const PairModifier *sm) const |
| Apply a SingletonModifier to the contents. | |
| void | apply_generic (const PairModifier *m) const |
| Just use apply() in the base class. | |
| bool | get_contains_particle_pair (ParticlePair v) const |
| This function is very slow and you should think hard about using it. More... | |
| unsigned int | get_number_of_particle_pairs () const |
| ParticlePair | get_particle_pair (unsigned int i) const |
| ParticlePairsTemp | get_particle_pairs () const |
| Public Member Functions inherited from IMP::kernel::Container | |
| virtual void | do_after_evaluate (DerivativeAccumulator *accpt) |
| Reset changed status. | |
| ModelObjectsTemp | do_get_outputs () const |
| containers don't have outputs | |
| ParticlesTemp | get_all_possible_particles () const |
| int | get_contents_version () const |
| bool | get_is_changed () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::kernel::ScoreState | |
| ScoreState (kernel::Model *m, std::string name) | |
| ScoreState (kernel::Model *m) | |
| ScoreState (std::string name="ScoreState %1%") | |
| void | after_evaluate (DerivativeAccumulator *accpt) |
| Do post evaluation work if needed. | |
| void | before_evaluate () |
| Force update of the structure. | |
| ContainersTemp | get_input_containers () const |
| ParticlesTemp | get_input_particles () const |
| ContainersTemp | get_output_containers () const |
| ParticlesTemp | get_output_particles () const |
| Public Member Functions inherited from IMP::kernel::ModelObject | |
| ModelObject (kernel::Model *m, std::string name) | |
| ModelObject (std::string name) | |
| virtual void | do_set_model (kernel::Model *) |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. | |
| bool | get_has_required_score_states () const |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| bool | get_is_part_of_model () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| void | set_has_dependencies (bool tf) |
| void | set_has_required_score_states (bool tf) |
| virtual void | set_model (kernel::Model *m) |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| virtual void | do_destroy () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Public Types inherited from IMP::kernel::PairContainer | |
| typedef ParticleIndexPair | ContainedIndexType |
| typedef ParticleIndexPairs | ContainedIndexTypes |
| typedef ParticlePair | ContainedType |
| typedef ParticlePairsTemp | ContainedTypes |
| Protected Member Functions inherited from IMP::kernel::PairContainer | |
| PairContainer (kernel::Model *m, std::string name="PairContainer %1%") | |
| virtual bool | do_get_provides_access () const |
| Protected Member Functions inherited from IMP::kernel::Container | |
| Container (kernel::Model *m, std::string name="Container %1%") | |
| void | set_is_changed (bool tf) |
| Call this with true when the contents of the container change. More... | |
| Protected Member Functions inherited from IMP::kernel::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| Object () | |
If it is assumed that each particle is in at most one such container, then ExclusiveConsecutivePairContainer should be used instead, since it is faster when doing certain computations.
Also see ConsecutivePairFilter.
Definition at line 30 of file ConsecutivePairContainer.h.
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Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.
Implements IMP::kernel::ModelObject.
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Get a list of all particles contained in this one, given that the input containers are up to date.
Implements IMP::kernel::Container.
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Get all the indexes contained in the container.
Implements IMP::kernel::PairContainer.
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Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from input list (those that are far apart in addition to those that are close).
Implements IMP::kernel::PairContainer.