A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

Demuxer (IMP.isd.demux_trajs)

InBoundingBox3DSingletonPredicate (IMP::core)

ParticleOutputs (IMP::kernel)

SigmoidRestraintSphere (IMP::pmi)

AddScores (IMP::score_functor)

DenseFloatLogGridKD (IMP::algebra)

InContainerPairFilter (IMP::container)

ParticlesAdaptor (IMP::domino)

SimpleAssignmentsTable (IMP::domino)

AddStringFlag (IMP::base)

DenseGrid3D (IMP::algebra)

InContainerQuadFilter (IMP::container)

ParticlesDummyRestraint (IMP::em2d)

SimpleLoadLink (IMP::rmf)

AdvancedFlag (IMP::base)

DenseGridStorageD (IMP::algebra)

InContainerSingletonFilter (IMP::container)

ParticleStates (IMP::domino)

SimpleSaveLink (IMP::rmf)

Alignment (IMP.pmi.analysis)

DenseIntLogGrid3D (IMP::algebra)

InContainerTripletFilter (IMP::container)

ParticleStatesTable (IMP::domino)

Simplex (IMP::gsl)

AlignmentClustering (IMP.multifit.cluster)

DensityDataPoints (IMP::multifit)

IncrementalScoringFunction (IMP::core)

PartitionalClustering (IMP::statistics)

Simulator (IMP::atom)

AlignSymmetric (IMP::cnmultifit)

DensityFillingRestraint (IMP::em)

Index (IMP::base)

PartitionalClusteringWithCenter (IMP::statistics)

SingleLinkage (IMP::em2d)

AllBipartitePairContainer (IMP::container)

DensityHeader (IMP::em)

IndexException (IMP::base)

PathLocalPlanner (IMP::kinematics)

SingletonConstraint (IMP::core)

AllMol2Selector (IMP::atom)

DensityMap (IMP::em)

IndexStates (IMP::domino)

PCAAligner (IMP::em)

SingletonContainer (IMP::kernel)

AllPairContainer (IMP::container)

DependencyScoreState (IMP::domino)

IndexVector (IMP::base)

PCAFitRestraint (IMP::em)

SingletonContainerAdaptor (IMP::kernel)

AllPDBSelector (IMP::atom)

DerivativeAccumulator (IMP::kernel)

InitialDockingFromXlinks (IMP.em2d.buildxlinks)

PCAFitRestraint (IMP::em2d)

SingletonContainerSet (IMP::container)

AllSamePairPredicate (IMP::core)

DerivativeCalculator (IMP::saxs)

InputAdaptor (IMP::base)

PDBSelector (IMP::atom)

SingletonContainerStatistics (IMP::container)

AllSameQuadPredicate (IMP::core)

DerivativesFromRefined (IMP::core)

InternalException (IMP::base)

PermutationStates (IMP::domino)

SingletonGeometry (IMP::display)

AllSameSingletonPredicate (IMP::core)

DerivativesToRefined (IMP::core)

IntsOrder (IMP::em2d)

Pipe (IMP.isd.utils)

SingletonModifier (IMP::kernel)

AllSameTripletPredicate (IMP::core)

DiameterRestraint (IMP::core)

IOException (IMP::base)

PivyWriter (IMP::display)

SingletonPredicate (IMP::kernel)

AmbiguousNOERestraint (IMP::isd)

Diffusion (IMP::atom)

IsCollisionPairPredicate (IMP::core)

Plane3D (IMP::algebra)

SingletonRestraint (IMP::core)

AmbiguousRestraint (IMP::isd)

Dihedral (IMP::atom)

IsosurfaceGeometry (IMP::display)

PlaneGeometry (IMP::display)

SingletonsConstraint (IMP::container)

Analysis (IMP.isd.Analysis)

DihedralAngleRevoluteJoint (IMP::kinematics)

J

Pointer (IMP::base)

SingletonScore (IMP::kernel)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DihedralRestraint (IMP::core)

PointerMember (IMP::base)

SingletonsGeometry (IMP::display)

AnchorsData (IMP::multifit)

DihedralSingletonScore (IMP::atom)

JeffreysRestraint (IMP::isd)

PointGeometry (IMP::display)

SingletonsOptimizerState (IMP::container)

AndPDBSelector (IMP::atom)

DirectorObjectChecker (IMP.test)

Joint (IMP::kinematics)

PolarResamplingParameters (IMP::em2d)

SingletonsRestraint (IMP::container)

Angle (IMP::atom)

DiscreteSampler (IMP::domino)

JPGImageReaderWriter (IMP::em2d)

PolygonGeometry (IMP::display)

SingletonStatistical (IMP::score_functor)

AngleRestraint (IMP::core)

DisjointSetsSubsetFilterTable (IMP::domino)

K

PPDBSelector (IMP::atom)

SkinSurfaceGeometry (IMP::display)

AngleSingletonScore (IMP::atom)

DistanceFilter (IMP::em2d)

PredicatePairsRestraint (IMP::container)

Slave (IMP.parallel)

AngleTripletScore (IMP::core)

DistanceFilterTable (IMP::em2d)

KClosePairsPairScore (IMP::core)

PredicateQuadsRestraint (IMP::container)

SlaveArray (IMP.parallel)

ApplicationTestCase (IMP.test)

DistanceMask (IMP::em)

KernelParameters (IMP::em)

PredicateSingletonScore (IMP::core)

Slice (IMP::domino)

Array (IMP::base)

DistancePairScore (IMP::core)

Key (IMP::kernel)

PredicateSingletonsRestraint (IMP::container)

SmoothingFunction (IMP::atom)

AssemblyHeader (IMP::multifit)

DistancePairScore (IMP::score_functor)

KinematicForest (IMP::kinematics)

PredicateTripletsRestraint (IMP::container)

Soap (IMP::score_functor)

Assignment (IMP::domino)

DistanceRestraint (IMP::core)

KinematicForestScoreState (IMP::kinematics)

PrincipalComponentAnalysisD (IMP::algebra)

SoapPairFilter (IMP::atom)

AssignmentContainer (IMP::domino)

DistributePairsScoreState (IMP::container)

KinematicNode (IMP::kinematics)

PrismaticJoint (IMP::kinematics)

SoftCylinderPairScore (IMP::misc)

AssignmentsTable (IMP::domino)

DistributeQuadsScoreState (IMP::container)

KMeans (IMP::kmeans)

ProbabilisticAnchorGraph (IMP::multifit)

SoftSpherePairScore (IMP::core)

Atom (IMP::atom)

DistributeSingletonsScoreState (IMP::container)

L

ProbabilisticSubsetFilterTable (IMP::domino)

SolventAccessibleSurface (IMP::saxs)

ATOMPDBSelector (IMP::atom)

DistributeTripletsScoreState (IMP::container)

ProcessOutput (IMP.pmi.output)

SparseGrid3D (IMP::algebra)

AtomType (IMP::atom)

Distribution (IMP::saxs)

LabelGeometry (IMP::display)

Profile (IMP::saxs)

SparseGridStorageD (IMP::algebra)

AttributeOptimizer (IMP::kernel)

DockOrder (IMP.em2d.buildxlinks)

LangevinThermostatOptimizerState (IMP::atom)

ProfileFitter (IMP::saxs)

SparseSymmetricPairMemoizer (IMP::base)

AttributeSingletonPredicate (IMP::core)

DOF (IMP::kinematics)

LeavesRefiner (IMP::core)

Profiler (IMP::benchmark)

SparseUnboundedGrid3D (IMP::algebra)

AverageDistanceLinkage (IMP::em2d)

DOFsSampler (IMP::kinematics)

LennardJones (IMP::atom)

ProjectingOptions (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

B

Domain (IMP::atom)

LennardJonesPairScore (IMP::atom)

ProjectingParameters (IMP::em2d)

SphereD (IMP::algebra)

DominoModel (IMP.em2d.DominoModel)

LessPairBySecond (IMP::em2d)

ProjectionFinder (IMP::em2d)

SphereDistance (IMP::score_functor)

BackbonePDBSelector (IMP::atom)

DominoSampler (IMP::domino)

Linear (IMP::core)

ProjectionMask (IMP::em2d)

SphereDistancePairScore (IMP::core)

BallMover (IMP::core)

Dope (IMP::score_functor)

Linear1DFunction (IMP::isd)

ProjectionParameters (IMP::em2d)

SphereDistanceToSingletonScore (IMP::core)

BallMover (IMP::symmetry)

DopePairScore (IMP::atom)

LinearFit2D (IMP::algebra)

ProjectionParametersScoreState (IMP::em2d)

SphereGeometry (IMP::display)

BerendsenThermostatOptimizerState (IMP::atom)

DummyRestraint (IMP::em2d)

LinearLowerBound (IMP::score_functor)

ProjectionStates (IMP::em2d)

SpherePatch3D (IMP::algebra)

BinormalTerm (IMP::modeller)

DummyRestraint (IMP::multifit)

ListAssignmentContainer (IMP::domino)

ProteinKinematics (IMP::kinematics)

SphericalVector3D (IMP::algebra)

BivariateFunction (IMP::isd)

DynamicListPairContainer (IMP::container)

ListAssignmentsTable (IMP::domino)

ProteinLigandAtomPairScore (IMP::atom)

SpiderHeader (IMP::em)

Bond (IMP::atom)

DynamicListQuadContainer (IMP::container)

ListPairContainer (IMP::container)

ProteinLigandRestraint (IMP::atom)

SpiderImageReaderWriter (IMP::em2d)

ForceFieldParameters::Bond (IMP::atom)

DynamicListSingletonContainer (IMP::container)

ListQuadContainer (IMP::container)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SpiderMapReaderWriter (IMP::em)

BondAngleRevoluteJoint (IMP::kinematics)

DynamicListTripletContainer (IMP::container)

ListSingletonContainer (IMP::container)

ProteomicsData (IMP::multifit)

State (IMP::atom)

Bonded (IMP::atom)

DynamicNearestNeighbor3D (IMP::algebra)

ListSubsetFilterTable (IMP::domino)

ProteomicsEMAlignmentAtomic (IMP::multifit)

StateAdaptor (IMP::misc)

BondedPairFilter (IMP::atom)

E

ListTripletContainer (IMP::container)

PymolWriter (IMP::display)

Statistical (IMP::score_functor)

BondEndpointsRefiner (IMP::atom)

LoadLink (IMP::rmf)

PythonDirectedGraph (IMP::kernel)

StatisticalPairScore (IMP::core)

BondGeometry (IMP::atom)

EdgePairGeometry (IMP::core)

LocalPlanner (IMP::kinematics)

Q

Statistics (IMP.isd.Statistics)

BondGraph (IMP::atom)

EdgePairsGeometry (IMP::core)

LocalSlave (IMP.parallel)

SteepestDescent (IMP::core)

BondPairContainer (IMP::atom)

ElementTable (IMP::atom)

LogEmbeddingD (IMP::algebra)

QuadConstraint (IMP::core)

StereochemistryPairFilter (IMP::atom)

BondsGeometry (IMP::atom)

Ellipsoid3D (IMP::algebra)

LogHolder (IMP.isd.demux_trajs)

QuadContainer (IMP::kernel)

Subset (IMP::domino)

BondSingletonScore (IMP::atom)

EllipsoidGeometry (IMP::display)

LognormalRestraint (IMP::isd)

QuadContainerAdaptor (IMP::kernel)

SubsetFilter (IMP::domino)

BoundedGridRangeD (IMP::algebra)

Em2DRestraint (IMP::em2d)

LogPairScore (IMP::misc)

QuadContainerSet (IMP::container)

SubsetFilterTable (IMP::domino)

BoundingBoxD (IMP::algebra)

Em2DRestraintParameters (IMP::em2d)

LogWrapper (IMP::isd)

QuadContainerStatistics (IMP::container)

SurfaceMeshGeometry (IMP::display)

BoundingBoxGeometry (IMP::display)

EM2DScore (IMP::em2d)

LowestRefinedPairScore (IMP::misc)

QuadModifier (IMP::kernel)

SurfaceShellDensityMap (IMP::em)

BoxSweepClosePairsFinder (IMP::core)

Embedding (IMP::statistics)

LRUCache (IMP::base)

QuadPredicate (IMP::kernel)

Switching (IMP::isd)

BranchAndBoundAssignmentsTable (IMP::domino)

EMReaderWriter (IMP::em)

M

QuadraticClosePairsFinder (IMP::core)

Symmetric (IMP::pmi)

BranchAndBoundSampler (IMP::domino)

Ensemble (IMP::multifit)

QuadRestraint (IMP::core)

T

BrownianDynamics (IMP::atom)

EnvelopeFitRestraint (IMP::em)

Manager (IMP.parallel)

QuadsConstraint (IMP::container)

BuildModel1 (IMP.pmi.macros)

EnvelopePenetrationRestraint (IMP::em)

MapDistanceTransform (IMP::em)

QuadScore (IMP::kernel)

TableRefiner (IMP::core)

C

EnvelopeScore (IMP::em)

MapReaderWriter (IMP::em)

QuadsOptimizerState (IMP::container)

TALOSReader (IMP.isd.TALOSReader)

EqualitySubsetFilterTable (IMP::domino)

MarginalHBondRestraint (IMP::isd)

QuadsRestraint (IMP::container)

TALOSRestraint (IMP::isd)

CAlphaPDBSelector (IMP::atom)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MarginalNOERestraint (IMP::isd)

QuasiNewton (IMP::gsl)

TempDir (IMP.test)

CappedAssignmentContainer (IMP::domino)

EquivalenceSubsetFilterTable (IMP::domino)

MasksManager (IMP::em2d)

R

TestCase (IMP.test)

CBetaPDBSelector (IMP::atom)

Error (IMP.parallel)

Mass (IMP::atom)

TextInput (IMP::base)

CenteredMat (IMP::em2d)

EuclideanMetric (IMP::statistics)

MasterCommunicator (IMP.parallel.master_communicator)

RadialDistributionFunction (IMP::saxs)

TextOutput (IMP::base)

CenterOfMass (IMP::atom)

EuclideanVectorKDMetric (IMP::algebra)

MatchTemplateResult (IMP::em2d)

RadiusDependentDistanceMask (IMP::em)

TextWriter (IMP::display)

Centroid (IMP::core)

EvaluationState (IMP::kernel)

MaxVectorKDMetric (IMP::algebra)

RadiusDependentKernelParameters (IMP::em)

TIFFImageReaderWriter (IMP::em2d)

CentroidOfRefined (IMP::core)

EventException (IMP::base)

MCCGSampler (IMP::core)

RadiusOfGyrationRestraint (IMP::multifit)

Timer (IMP::base)

Chain (IMP::atom)

EventPairsOptimizerState (IMP::container)

MeanAbsoluteDifference (IMP::em2d)

RadiusOfGyrationRestraint (IMP::saxs)

Transform (IMP::core)

ChainPDBSelector (IMP::atom)

EventQuadsOptimizerState (IMP::container)

Memoizer (IMP::base)

RAII (IMP::base)

Transformation2D (IMP::algebra)

Charged (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

MergeTreeBuilder (IMP::multifit)

RangeViewAssignmentContainer (IMP::domino)

Transformation3D (IMP::algebra)

CHARMMAtom (IMP::atom)

EventTripletsOptimizerState (IMP::container)

Metric (IMP::statistics)

ReadAssignmentContainer (IMP::domino)

TransformationAndReflectionSymmetry (IMP::core)

CHARMMAtomTopology (IMP::atom)

ExampleComplexRestraint (IMP::example)

MetricClosePairsFinder (IMP::misc)

ReadHDF5AssignmentContainer (IMP::domino)

TransformationJoint (IMP::kinematics)

CHARMMBondEndpoint (IMP::atom)

ExampleConstraint (IMP::example)

MinimumPairRestraint (IMP::container)

RecursiveAssignmentsTable (IMP::domino)

TransformationSymmetry (IMP::core)

CHARMMBondParameters (IMP::atom)

ExampleDecorator (IMP::example)

MinimumPairScore (IMP::container)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

TransformedDistancePairScore (IMP::core)

CHARMMConnection (IMP::atom)

ExampleObject (IMP::example)

MinimumQuadRestraint (IMP::container)

RecursivePartitionalClusteringMetric (IMP::statistics)

TransformMover (IMP::pmi)

CHARMMDihedralParameters (IMP::atom)

ExamplePairScore (IMP::example)

MinimumQuadScore (IMP::container)

RecursiveStates (IMP::domino)

Triangle3D (IMP::algebra)

CHARMMIdealResidueTopology (IMP::atom)

ExampleRestraint (IMP::example)

MinimumRestraint (IMP::core)

RefCountChecker (IMP.test)

TriangleGeometry (IMP::display)

CHARMMInternalCoordinate (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

Reference (IMP::core)

TripletConstraint (IMP::core)

CHARMMParameters (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

MinimumSingletonRestraint (IMP::container)

ReferenceFrame3D (IMP::algebra)

TripletContainer (IMP::kernel)

CHARMMPatch (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumSingletonScore (IMP::container)

ReferenceFrameGeometry (IMP::display)

TripletContainerAdaptor (IMP::kernel)

CHARMMResidueTopology (IMP::atom)

ExampleUnaryFunction (IMP::example)

MinimumTripletRestraint (IMP::container)

RefinedPairsPairScore (IMP::core)

TripletContainerSet (IMP::container)

CHARMMResidueTopologyBase (IMP::atom)

Exception (IMP::base)

MinimumTripletScore (IMP::container)

Refiner (IMP::kernel)

TripletContainerStatistics (IMP::container)

CHARMMSegmentTopology (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

Model (IMP::kernel)

Reflection3D (IMP::algebra)

TripletModifier (IMP::kernel)

CHARMMStereochemistryRestraint (IMP::atom)

ExclusionSubsetFilterTable (IMP::domino)

ModelException (IMP::base)

RegistrationResult (IMP::em2d)

TripletPredicate (IMP::kernel)

CHARMMTopology (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

ModellerRestraints (IMP.modeller)

RelativePositionMover (IMP::em2d)

TripletRestraint (IMP::core)

ChecksScoreState (IMP::core)

ExclusiveConsecutivePairFilter (IMP::container)

ModelLoader (IMP.modeller)

RemoteError (IMP.parallel)

TripletsConstraint (IMP::container)

ChiFreeScore (IMP::saxs)

ExtendedGridIndexD (IMP::algebra)

ModelObject (IMP::kernel)

RemoveRigidMotionOptimizerState (IMP::atom)

TripletScore (IMP::kernel)

ChildrenRefiner (IMP::core)

EzRestraint (IMP::atom)

ModifierVisitor (IMP::core)

RemoveTranslationOptimizerState (IMP::atom)

TripletsOptimizerState (IMP::container)

ChimeraWriter (IMP::display)

F

Mol2Selector (IMP::atom)

ReplicaExchange (IMP::mpi)

TripletsRestraint (IMP::container)

ChiScore (IMP::saxs)

MolCnSymmAxisDetector (IMP::cnmultifit)

ReplicaExchange0 (IMP.pmi.macros)

TruncatedHarmonic (IMP::core)

ChiScoreLog (IMP::saxs)

FFTFitting (IMP::multifit)

MolecularDynamics (IMP::isd)

Representation (IMP::atom)

Typed (IMP::core)

ChiSquaredScore (IMP::em2d)

FFTFittingOutput (IMP::multifit)

MolecularDynamics (IMP::atom)

RepulsiveDistancePairScore (IMP::isd)

TypedPairScore (IMP::core)

ChiSquareMetric (IMP::statistics)

FilterGeometry (IMP::display)

MolecularDynamicsMover (IMP::isd)

Residue (IMP::atom)

U

CloseBipartitePairContainer (IMP::container)

Fine2DRegistrationRestraint (IMP::em2d)

Molecule (IMP::atom)

ResidueRotamer (IMP::rotamer)

ClosedCubicSpline (IMP::core)

FitRestraint (IMP::em)

MonteCarlo (IMP::core)

ResidueType (IMP::atom)

UnaryFunction (IMP::kernel)

ClosePairContainer (IMP::container)

FittingSolutionRecord (IMP::multifit)

MonteCarloMover (IMP::core)

Resolution (IMP::pmi)

UnaryFunctionEvaluate (IMP::score_functor)

ClosePairsFinder (IMP::core)

FittingSolutions (IMP::em)

MonteCarloMoverResult (IMP::core)

Restraint (IMP::saxs)

UnboundedGridRangeD (IMP::algebra)

ClosePairsPairScore (IMP::core)

FittingStates (IMP::multifit)

MonteCarloRelativeMoves (IMP.em2d.MonteCarloRelativeMoves)

Restraint (IMP::kernel)

Uncertainty (IMP::pmi)

Clustering (IMP.pmi.analysis)

FixedRefiner (IMP::core)

MonteCarloWithBasinHopping (IMP::core)

RestraintCache (IMP::domino)

UncheckedWeakPointer (IMP::base)

ClusterRecord (IMP.em2d.solutions_io)

FixedXYZ (IMP::algebra)

MonteCarloWithLocalOptimization (IMP::core)

RestraintGeometry (IMP::display)

Undecorator (IMP::kernel)

ClusterSet (IMP::em2d)

Flag (IMP::base)

MoveStatisticsScoreState (IMP::core)

RestraintsAdaptor (IMP::kernel)

UniformBackboneSampler (IMP::kinematics)

CnSymmAxisDetector (IMP::cnmultifit)

FloatIndex (IMP::kernel)

MRCReaderWriter (IMP::em)

RestraintScoreSubsetFilterTable (IMP::domino)

UniformPrior (IMP::isd)

CoarseCC (IMP::em)

FNormal (IMP::isd)

MSConnectivityRestraint (IMP::core)

RestraintSet (IMP::kernel)

UnivariateFunction (IMP::isd)

CoarseCCatIntervals (IMP::em)

ForceFieldParameters (IMP::atom)

MultipleBinormalRestraint (IMP::modeller)

RestraintSetGeometry (IMP::display)

UnorderedTypePairPredicate (IMP::core)

CoarseConvolution (IMP::em)

ForceSwitch (IMP::atom)

MultivariateFNormalSufficient (IMP::isd)

RestraintsScoringFunction (IMP::core)

UnorderedTypeQuadPredicate (IMP::core)

CoinFlipPairPredicate (IMP::core)

FormFactorTable (IMP::saxs)

MyMetric (write_a_metric)

ResultsDB (IMP.em2d.solutions_io)

UnorderedTypeSingletonPredicate (IMP::core)

CoinFlipQuadPredicate (IMP::core)

Fragment (IMP::atom)

N

RevoluteJoint (IMP::kinematics)

UnorderedTypeTripletPredicate (IMP::core)

CoinFlipSingletonPredicate (IMP::core)

FretData (IMP::isd)

RigidBodiesImageFitRestraint (IMP::em2d)

UsageException (IMP::base)

CoinFlipTripletPredicate (IMP::core)

FretRestraint (IMP::isd)

NearestNeighborD (IMP::algebra)

RigidBodiesProfileHandler (IMP::saxs)

V

CollisionCrossSection (IMP::em2d)

G

NearestNeighborsClosePairsFinder (IMP::core)

RigidBody (IMP::core)

Color (IMP::display)

NeighborsTable (IMP::core)

RigidBodyDerivativeGeometry (IMP::core)

Value (IMP::base)

ColorChange (IMP.pmi.tools)

Gaussian (IMP::core)

NestedRigidBodyStates (IMP::domino)

RigidBodyDerivativesGeometry (IMP::core)

ValueException (IMP::base)

Colored (IMP::display)

Gaussian3D (IMP::algebra)

NetworkError (IMP.parallel)

RigidBodyDiffusion (IMP::atom)

Vector (IMP::base)

CommandDispatcher (IMP.kernel)

GaussianProcessInterpolation (IMP::isd)

NOERestraint (IMP::isd)

RigidBodyDistancePairScore (IMP::core)

VectorBaseD (IMP::algebra)

CommonEndpointPairFilter (IMP::misc)

GaussianProcessInterpolationRestraint (IMP::isd)

NoMoreSlavesError (IMP.parallel)

RigidBodyFrameGeometry (IMP::core)

VectorD (IMP::algebra)

ComplementarityRestraint (IMP::multifit)

GaussianRestraint (IMP::isd)

NonAlternativePDBSelector (IMP::atom)

RigidBodyFramesGeometry (IMP::core)

VectorDEmbedding (IMP::statistics)

CompleteLinkage (IMP::em2d)

GeneralizedGuinierPorodFunction (IMP::isd)

NonCopyable (IMP::base)

RigidBodyHierarchyGeometry (IMP::core)

VectorKDMetric (IMP::algebra)

ComponentHeader (IMP::multifit)

GenericAttributeSingletonScore (IMP::core)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyMember (IMP::core)

VelocityScalingOptimizerState (IMP::atom)

CompositeJoint (IMP::kinematics)

GenericBoundingBox3DSingletonScore (IMP::core)

NonRigidMember (IMP::core)

RigidBodyMover (IMP::core)

VersionInfo (IMP::base)

CompositeRestraint (IMP::pmi)

GenericDistanceToSingletonScore (IMP::core)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidBodyMover (IMP::symmetry)

VolumeRestraint (IMP::core)

CompoundStates (IMP::domino)

GeometricHash (IMP::multifit)

NonWaterPDBSelector (IMP::atom)

RigidBodyStates (IMP::domino)

Voxel (IMP::em)

Cone3D (IMP::algebra)

GeometricPrimitiveD (IMP::algebra)

NormalizedSphereDistancePairScore (IMP::core)

RigidBodyTorque (IMP::core)

W

Configuration (IMP::kernel)

Geometry (IMP::display)

NormalMover (IMP::core)

RigidBodyTunneler (IMP::core)

ConfigurationSet (IMP::kernel)

GeometryProcessor (IMP::display)

NotPDBSelector (IMP::atom)

RigidBodyUmbrella (IMP::core)

WarningContext (IMP::base)

ConfigurationSetRMSDMetric (IMP::statistics)

GeometrySet (IMP::display)

NPDBSelector (IMP::atom)

RigidClosePairsFinder (IMP::core)

WaterPDBSelector (IMP::atom)

ConfigurationSetXYZEmbedding (IMP::statistics)

GetModelDensity (IMP.pmi.analysis)

Nuisance (IMP::isd)

RigidMember (IMP::core)

WeakPointer (IMP::base)

ConjugateGradients (IMP::gsl)

GridClosePairsFinder (IMP::core)

O

RotamerAngleTuple (IMP::rotamer)

Weight (IMP::isd)

ConjugateGradients (IMP::core)

GridD (IMP::algebra)

RotamerCalculator (IMP::rotamer)

WeightedDerivativesToRefined (IMP::core)

ConnectingPairContainer (IMP::container)

GridIndexD (IMP::algebra)

Object (IMP::base)

RotamerLibrary (IMP::rotamer)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConnectivityRestraint (IMP::core)

GridStates (IMP::em2d)

OpenCubicSpline (IMP::core)

Rotation2D (IMP::algebra)

WeightedProfileFitter (IMP::saxs)

ConnollySurfacePoint (IMP::algebra)

GSLOptimizer (IMP::gsl)

OpenCubicSpline (IMP::score_functor)

Rotation3D (IMP::algebra)

WeightedSphereDistancePairScore (IMP::core)

ConsecutivePairContainer (IMP::container)

H

Optimizer (IMP::kernel)

RRT (IMP::kinematics)

WeightMover (IMP::isd)

ConsecutivePairFilter (IMP::container)

OptimizerState (IMP::kernel)

RunInTempDir (IMP.test)

WeightRestraint (IMP::isd)

ConstantPairPredicate (IMP::core)

Harmonic (IMP::core)

OptionParser (IMP.kernel)

S

WeightScore (IMP::score_functor)

ConstantQuadPredicate (IMP::core)

Harmonic (IMP::score_functor)

Order (IMP::domino)

WormLikeChain (IMP::misc)

ConstantRestraint (IMP::core)

HarmonicDistancePairScore (IMP::core)

OrderedTypePairPredicate (IMP::core)

SameResiduePairFilter (IMP::atom)

WriteAssignmentContainer (IMP::domino)

ConstantSingletonPredicate (IMP::core)

HarmonicLowerBound (IMP::core)

OrderedTypeQuadPredicate (IMP::core)

SampleAssignmentContainer (IMP::domino)

WriteHDF5AssignmentContainer (IMP::domino)

ConstantTripletPredicate (IMP::core)

HarmonicLowerBound (IMP::score_functor)

OrderedTypeSingletonPredicate (IMP::core)

SampledDensityMap (IMP::em)

WriteOptimizerState (IMP::display)

Constraint (IMP::kernel)

HarmonicSphereDistancePairScore (IMP::core)

OrderedTypeTripletPredicate (IMP::core)

SampleObjects (IMP.pmi.sampling_tools)

WritePDBOptimizerState (IMP::atom)

ConstVector (IMP::base)

HarmonicUpperBound (IMP::core)

OrientedSoap (IMP::score_functor)

Sampler (IMP::kernel)

Writer (IMP::display)

Container (IMP::kernel)

HarmonicUpperBound (IMP::score_functor)

OrientedSoapPairScore (IMP::atom)

SaveLink (IMP::rmf)

WriterAdaptor (IMP::display)

Context (IMP.parallel)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

OrPDBSelector (IMP::atom)

SaveOptimizerState (IMP::rmf)

WriteRestraintScoresOptimizerState (IMP::core)

Copy (IMP::atom)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

Output (IMP.pmi.output)

SaveToConfigurationSetOptimizerState (IMP::kernel)

X

Cosine (IMP::core)

HarmonicWell (IMP::core)

P

Scale (IMP::isd)

CoulombPairScore (IMP::atom)

HasHigherCCC (IMP::em2d)

ScopedAddCacheAttribute (IMP::kernel)

Xlink (IMP.em2d.buildxlinks)

Covariance1DFunction (IMP::isd)

HasLowerScore (IMP::em2d)

PackedAssignmentContainer (IMP::domino)

ScopedSetAttribute (IMP::kernel)

XlinksDict (IMP.em2d.buildxlinks)

Cover (IMP::core)

HeapAssignmentContainer (IMP::domino)

PairConstraint (IMP::core)

Score (IMP::score_functor)

XplorReaderWriter (IMP::em)

CoverBond (IMP::atom)

HeapRecord (IMP.em2d.solutions_io)

PairContainer (IMP::kernel)

ScoreAccumulator (IMP::kernel)

XYZ (IMP::core)

CoverRefined (IMP::core)

HierarchiesGeometry (IMP::atom)

PairContainerAdaptor (IMP::kernel)

ScoreFunction (IMP::em2d)

XYZDerivativeGeometry (IMP::core)

CPDBSelector (IMP::atom)

Hierarchy (IMP::core)

PairContainerSet (IMP::container)

ScoreState (IMP::kernel)

XYZDerivativesGeometry (IMP::core)

CreateLogContext (IMP::base)

Hierarchy (IMP::atom)

PairContainerStatistics (IMP::container)

ScoreUnaryFunction (IMP::score_functor)

XYZR (IMP::core)

CrossLinkData (IMP::isd)

HierarchyCounter (IMP::core)

PairGeometry (IMP::display)

ScoringFunction (IMP::kernel)

XYZRGeometry (IMP::core)

CrossLinkMS (IMP.pmi.nonmantained)

HierarchyGeometry (IMP::atom)

PairListSubsetFilterTable (IMP::domino)

ScoringFunctionAdaptor (IMP::kernel)

XYZRsGeometry (IMP::core)

CrossLinkMSRestraint (IMP::isd)

HierarchyLoadLink (IMP::rmf)

PairModifier (IMP::kernel)

SecondaryStructureResidue (IMP::atom)

XYZStates (IMP::domino)

CustomXYZR (IMP::misc)

HierarchySaveLink (IMP::rmf)

PairPredicate (IMP::kernel)

Segment3D (IMP::algebra)

d

CvEstimator (IMP.isd.TuneRex)

HierarchyTraits (IMP::core)

PairRestraint (IMP::core)

SegmentationParameters (IMP::em2d)

Cylinder3D (IMP::algebra)

HierarchyVisitor (IMP::core)

PairsConstraint (IMP::container)

SegmentGeometry (IMP::display)

dof (IMP.pmi.dof)

CylinderGeometry (IMP::display)

HighDensityEmbedding (IMP::em)

PairScore (IMP::kernel)

Selection (IMP::atom)

m

CysteineCrossLinkData (IMP::isd)

HistogramD (IMP::statistics)

PairsGeometry (IMP::display)

SelectionGeometry (IMP::atom)

CysteineCrossLinkRestraint (IMP::isd)

History (IMP.isd.History)

PairsOptimizerState (IMP::container)

SerialMover (IMP::core)

map (IMP::base)

D

HybridMonteCarlo (IMP::isd)

PairsRestraint (IMP::container)

SetCheckState (IMP::base)

p

HydrogenPDBSelector (IMP::atom)

ParabolicFit2D (IMP::algebra)

SetLogState (IMP::base)

Database2 (IMP.em2d.Database)

I

Particle (IMP::kernel)

SetLogTarget (IMP::base)

piecewise_linear_distribution (IMP::base)

DataObject (IMP::core)

ParticleAdaptor (IMP::kernel)

SetNumberOfThreads (IMP::base)

s

DataPointsAssignment (IMP::multifit)

Image (IMP::em2d)

ParticleEmbedding (IMP::statistics)

SettingsData (IMP::multifit)

set (IMP::base)

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